Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1528 and GFF1529 are separated by 306 nucleotides GFF1529 and GFF1530 are separated by 168 nucleotides GFF1530 and GFF1531 are separated by 67 nucleotides GFF1531 and GFF1532 are separated by 195 nucleotides
GFF1528 - Leucyl/phenylalanyl-tRNA--protein transferase, at 315,725 to 316,351
GFF1528
GFF1529 - hypothetical protein, at 316,658 to 316,759
GFF1529
GFF1530 - DNA translocase FtsK, at 316,928 to 319,336
GFF1530
GFF1531 - Outer-membrane lipoprotein carrier protein, at 319,404 to 320,024
GFF1531
GFF1532 - Replication-associated recombination protein A, at 320,220 to 321,542
GFF1532
Position (kb) 316
317
318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 315.969 kb on + strand, within GFF1528 at 316.040 kb on + strand, within GFF1528 at 316.040 kb on + strand, within GFF1528 at 316.041 kb on - strand, within GFF1528 at 316.044 kb on + strand, within GFF1528 at 316.044 kb on + strand, within GFF1528 at 316.045 kb on - strand, within GFF1528 at 316.045 kb on - strand, within GFF1528 at 316.045 kb on - strand, within GFF1528 at 316.045 kb on - strand, within GFF1528 at 316.045 kb on - strand, within GFF1528 at 316.045 kb on - strand, within GFF1528 at 316.086 kb on + strand, within GFF1528 at 316.150 kb on - strand, within GFF1528 at 316.384 kb on + strand at 316.384 kb on + strand at 316.384 kb on + strand at 316.384 kb on + strand at 316.385 kb on - strand at 316.385 kb on - strand at 316.385 kb on - strand at 316.385 kb on - strand at 316.391 kb on + strand at 316.392 kb on - strand at 316.392 kb on - strand at 316.550 kb on + strand at 316.551 kb on - strand at 316.610 kb on + strand at 316.610 kb on + strand at 316.623 kb on + strand at 316.623 kb on + strand at 316.623 kb on + strand at 316.624 kb on - strand at 316.632 kb on + strand at 316.632 kb on + strand at 316.694 kb on + strand, within GFF1529 at 316.695 kb on - strand, within GFF1529 at 316.742 kb on + strand, within GFF1529 at 316.742 kb on + strand, within GFF1529 at 316.786 kb on - strand at 316.786 kb on - strand at 316.799 kb on + strand at 316.799 kb on + strand at 316.799 kb on + strand at 316.800 kb on - strand at 316.800 kb on - strand at 316.819 kb on + strand at 316.819 kb on + strand at 316.820 kb on - strand at 316.820 kb on - strand at 316.820 kb on - strand at 316.820 kb on - strand at 316.854 kb on - strand at 316.879 kb on - strand at 316.892 kb on - strand at 316.892 kb on - strand at 317.138 kb on + strand at 317.180 kb on + strand, within GFF1530 at 317.793 kb on + strand, within GFF1530 at 317.894 kb on + strand, within GFF1530 at 318.422 kb on + strand, within GFF1530 at 318.422 kb on + strand, within GFF1530 at 318.422 kb on + strand, within GFF1530 at 318.423 kb on - strand, within GFF1530 at 318.518 kb on + strand, within GFF1530 at 318.678 kb on + strand, within GFF1530 at 318.746 kb on - strand, within GFF1530 at 318.941 kb on + strand, within GFF1530 at 318.941 kb on + strand, within GFF1530 at 318.941 kb on + strand, within GFF1530 at 318.941 kb on + strand, within GFF1530 at 318.941 kb on + strand, within GFF1530 at 318.941 kb on + strand, within GFF1530 at 318.942 kb on - strand, within GFF1530 at 318.942 kb on - strand, within GFF1530 at 318.942 kb on - strand, within GFF1530 at 319.277 kb on - strand at 319.387 kb on + strand at 319.387 kb on + strand at 319.388 kb on - strand at 320.023 kb on - strand at 320.067 kb on + strand at 320.096 kb on + strand at 320.096 kb on + strand at 320.097 kb on - strand at 320.097 kb on - strand at 320.099 kb on - strand at 320.099 kb on - strand at 320.099 kb on - strand at 320.157 kb on + strand at 320.157 kb on + strand at 320.157 kb on + strand at 320.292 kb on + strand at 320.292 kb on + strand at 320.292 kb on + strand at 320.292 kb on + strand at 320.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 315,969 + GFF1528 0.39 +1.9 316,040 + GFF1528 0.50 +0.1 316,040 + GFF1528 0.50 -0.3 316,041 - GFF1528 0.50 -1.5 316,044 + GFF1528 0.51 -1.0 316,044 + GFF1528 0.51 -0.9 316,045 - GFF1528 0.51 -0.4 316,045 - GFF1528 0.51 +1.5 316,045 - GFF1528 0.51 -0.8 316,045 - GFF1528 0.51 -1.5 316,045 - GFF1528 0.51 -0.8 316,045 - GFF1528 0.51 +1.2 316,086 + GFF1528 0.58 +1.1 316,150 - GFF1528 0.68 -0.4 316,384 + -0.0 316,384 + -1.1 316,384 + -0.8 316,384 + +0.6 316,385 - -0.9 316,385 - -0.4 316,385 - -0.5 316,385 - -0.2 316,391 + -0.6 316,392 - +0.2 316,392 - +0.7 316,550 + -2.2 316,551 - -0.4 316,610 + -0.1 316,610 + -0.6 316,623 + +0.1 316,623 + +0.3 316,623 + -0.8 316,624 - +1.3 316,632 + +0.4 316,632 + +0.4 316,694 + GFF1529 0.35 +1.5 316,695 - GFF1529 0.36 -0.1 316,742 + GFF1529 0.82 -1.0 316,742 + GFF1529 0.82 +0.6 316,786 - -0.5 316,786 - +0.1 316,799 + +0.1 316,799 + -1.8 316,799 + +0.2 316,800 - -0.2 316,800 - -1.4 316,819 + +1.3 316,819 + +0.7 316,820 - +1.2 316,820 - +0.0 316,820 - -2.0 316,820 - -0.1 316,854 - -0.7 316,879 - +0.1 316,892 - -0.5 316,892 - -1.3 317,138 + +0.3 317,180 + GFF1530 0.10 -1.0 317,793 + GFF1530 0.36 -0.8 317,894 + GFF1530 0.40 -0.5 318,422 + GFF1530 0.62 +0.8 318,422 + GFF1530 0.62 -2.0 318,422 + GFF1530 0.62 -0.5 318,423 - GFF1530 0.62 +1.5 318,518 + GFF1530 0.66 +0.2 318,678 + GFF1530 0.73 +0.5 318,746 - GFF1530 0.75 -1.3 318,941 + GFF1530 0.84 -0.8 318,941 + GFF1530 0.84 -0.5 318,941 + GFF1530 0.84 +0.7 318,941 + GFF1530 0.84 -0.4 318,941 + GFF1530 0.84 -1.2 318,941 + GFF1530 0.84 -0.1 318,942 - GFF1530 0.84 +1.1 318,942 - GFF1530 0.84 -0.8 318,942 - GFF1530 0.84 -0.5 319,277 - +0.5 319,387 + +1.0 319,387 + +1.3 319,388 - -0.5 320,023 - -0.6 320,067 + -0.6 320,096 + -0.6 320,096 + +0.1 320,097 - -1.0 320,097 - +0.0 320,099 - -0.4 320,099 - +0.3 320,099 - -1.0 320,157 + -1.2 320,157 + -0.3 320,157 + -0.5 320,292 + +0.3 320,292 + +0.3 320,292 + +0.1 320,292 + -0.1 320,293 - -0.2
Or see this region's nucleotide sequence