Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1066 and GFF1067 are separated by 221 nucleotides GFF1067 and GFF1068 overlap by 4 nucleotides GFF1068 and GFF1069 are separated by 54 nucleotides
GFF1066 - Aspartate-proton symporter, at 408,292 to 409,917
GFF1066
GFF1067 - HTH-type transcriptional activator RhaS, at 410,139 to 410,909
GFF1067
GFF1068 - Cysteine/O-acetylserine efflux protein, at 410,906 to 411,502
GFF1068
GFF1069 - HTH-type transcriptional activator RhaS, at 411,557 to 412,393
GFF1069
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 409.938 kb on + strand at 409.938 kb on + strand at 410.010 kb on + strand at 410.011 kb on - strand at 410.105 kb on - strand at 410.289 kb on + strand, within GFF1067 at 410.306 kb on + strand, within GFF1067 at 410.306 kb on + strand, within GFF1067 at 410.307 kb on - strand, within GFF1067 at 410.307 kb on - strand, within GFF1067 at 410.397 kb on + strand, within GFF1067 at 410.398 kb on - strand, within GFF1067 at 410.466 kb on + strand, within GFF1067 at 410.466 kb on + strand, within GFF1067 at 410.466 kb on + strand, within GFF1067 at 410.467 kb on - strand, within GFF1067 at 410.467 kb on - strand, within GFF1067 at 410.514 kb on + strand, within GFF1067 at 410.515 kb on - strand, within GFF1067 at 410.619 kb on + strand, within GFF1067 at 410.619 kb on + strand, within GFF1067 at 410.619 kb on + strand, within GFF1067 at 410.620 kb on - strand, within GFF1067 at 410.620 kb on - strand, within GFF1067 at 410.873 kb on + strand at 410.907 kb on + strand at 411.110 kb on + strand, within GFF1068 at 411.111 kb on - strand, within GFF1068 at 411.436 kb on + strand, within GFF1068 at 411.437 kb on - strand, within GFF1068 at 411.491 kb on + strand at 411.491 kb on + strand at 411.492 kb on - strand at 411.609 kb on + strand at 411.735 kb on + strand, within GFF1069 at 411.736 kb on - strand, within GFF1069 at 411.736 kb on - strand, within GFF1069 at 411.812 kb on + strand, within GFF1069 at 411.837 kb on + strand, within GFF1069 at 411.837 kb on + strand, within GFF1069 at 411.837 kb on + strand, within GFF1069 at 411.856 kb on - strand, within GFF1069 at 411.992 kb on + strand, within GFF1069 at 411.992 kb on + strand, within GFF1069 at 411.992 kb on + strand, within GFF1069 at 411.993 kb on - strand, within GFF1069 at 411.993 kb on - strand, within GFF1069 at 411.993 kb on - strand, within GFF1069 at 412.132 kb on - strand, within GFF1069 at 412.132 kb on - strand, within GFF1069 at 412.143 kb on + strand, within GFF1069 at 412.144 kb on - strand, within GFF1069 at 412.147 kb on + strand, within GFF1069 at 412.147 kb on + strand, within GFF1069 at 412.147 kb on + strand, within GFF1069 at 412.148 kb on - strand, within GFF1069 at 412.219 kb on + strand, within GFF1069 at 412.219 kb on + strand, within GFF1069 at 412.308 kb on + strand, within GFF1069 at 412.406 kb on + strand at 412.406 kb on + strand at 412.407 kb on - strand at 412.407 kb on - strand at 412.407 kb on - strand at 412.436 kb on + strand at 412.460 kb on + strand at 412.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 409,938 + +0.3 409,938 + -0.3 410,010 + -0.1 410,011 - +0.1 410,105 - +0.2 410,289 + GFF1067 0.19 +0.2 410,306 + GFF1067 0.22 +1.3 410,306 + GFF1067 0.22 +0.2 410,307 - GFF1067 0.22 +0.5 410,307 - GFF1067 0.22 +1.0 410,397 + GFF1067 0.33 -0.8 410,398 - GFF1067 0.34 +0.7 410,466 + GFF1067 0.42 -2.1 410,466 + GFF1067 0.42 -1.1 410,466 + GFF1067 0.42 +1.2 410,467 - GFF1067 0.43 -0.2 410,467 - GFF1067 0.43 -0.9 410,514 + GFF1067 0.49 +2.5 410,515 - GFF1067 0.49 -2.0 410,619 + GFF1067 0.62 -0.5 410,619 + GFF1067 0.62 -0.3 410,619 + GFF1067 0.62 +1.0 410,620 - GFF1067 0.62 -0.0 410,620 - GFF1067 0.62 -0.5 410,873 + -0.3 410,907 + -1.4 411,110 + GFF1068 0.34 -0.3 411,111 - GFF1068 0.34 +0.9 411,436 + GFF1068 0.89 +1.2 411,437 - GFF1068 0.89 -0.8 411,491 + +0.5 411,491 + -1.5 411,492 - +0.1 411,609 + -0.4 411,735 + GFF1069 0.21 -0.5 411,736 - GFF1069 0.21 -0.3 411,736 - GFF1069 0.21 +0.7 411,812 + GFF1069 0.30 -0.3 411,837 + GFF1069 0.33 -1.9 411,837 + GFF1069 0.33 -0.4 411,837 + GFF1069 0.33 +0.1 411,856 - GFF1069 0.36 +0.6 411,992 + GFF1069 0.52 -0.2 411,992 + GFF1069 0.52 -0.8 411,992 + GFF1069 0.52 -0.0 411,993 - GFF1069 0.52 -0.7 411,993 - GFF1069 0.52 -0.9 411,993 - GFF1069 0.52 -0.3 412,132 - GFF1069 0.69 -0.7 412,132 - GFF1069 0.69 +0.3 412,143 + GFF1069 0.70 +2.0 412,144 - GFF1069 0.70 +0.2 412,147 + GFF1069 0.70 +0.7 412,147 + GFF1069 0.70 +0.0 412,147 + GFF1069 0.70 -0.4 412,148 - GFF1069 0.71 -0.1 412,219 + GFF1069 0.79 -0.2 412,219 + GFF1069 0.79 -0.9 412,308 + GFF1069 0.90 +0.1 412,406 + -0.3 412,406 + +0.8 412,407 - +0.1 412,407 - -1.2 412,407 - -0.3 412,436 + -0.7 412,460 + -1.0 412,461 - +0.1
Or see this region's nucleotide sequence