Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01772

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01770 and MPMX26_01771 are separated by 9 nucleotidesMPMX26_01771 and MPMX26_01772 are separated by 87 nucleotidesMPMX26_01772 and MPMX26_01773 are separated by 92 nucleotidesMPMX26_01773 and MPMX26_01774 are separated by 274 nucleotides MPMX26_01770: MPMX26_01770 - Ethanolamine ammonia-lyase heavy chain, at 1,831,090 to 1,832,475 _01770 MPMX26_01771: MPMX26_01771 - Ethanolamine ammonia-lyase light chain, at 1,832,485 to 1,833,300 _01771 MPMX26_01772: MPMX26_01772 - hypothetical protein, at 1,833,388 to 1,834,113 _01772 MPMX26_01773: MPMX26_01773 - Protein YceI, at 1,834,206 to 1,834,805 _01773 MPMX26_01774: MPMX26_01774 - hypothetical protein, at 1,835,080 to 1,835,631 _01774 Position (kb) 1833 1834 1835Strain fitness (log2 ratio) -1 0 1 2 3at 1833.677 kb on - strand, within MPMX26_01772at 1833.753 kb on + strand, within MPMX26_01772at 1833.805 kb on + strand, within MPMX26_01772at 1833.996 kb on + strand, within MPMX26_01772at 1834.038 kb on + strand, within MPMX26_01772at 1834.053 kb on + strandat 1834.256 kb on - strandat 1834.337 kb on - strand, within MPMX26_01773at 1834.370 kb on - strand, within MPMX26_01773at 1834.638 kb on - strand, within MPMX26_01773at 1834.713 kb on - strand, within MPMX26_01773at 1834.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,833,677 - MPMX26_01772 0.40 +3.1
1,833,753 + MPMX26_01772 0.50 +1.4
1,833,805 + MPMX26_01772 0.57 -0.5
1,833,996 + MPMX26_01772 0.84 +0.5
1,834,038 + MPMX26_01772 0.90 +1.2
1,834,053 + -1.0
1,834,256 - -0.7
1,834,337 - MPMX26_01773 0.22 -1.1
1,834,370 - MPMX26_01773 0.27 -0.6
1,834,638 - MPMX26_01773 0.72 -0.4
1,834,713 - MPMX26_01773 0.84 +0.6
1,834,754 - -0.9

Or see this region's nucleotide sequence