Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01160

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01158 and MPMX26_01159 are separated by 10 nucleotidesMPMX26_01159 and MPMX26_01160 overlap by 1 nucleotidesMPMX26_01160 and MPMX26_01161 are separated by 4 nucleotides MPMX26_01158: MPMX26_01158 - Protoheme IX farnesyltransferase, at 1,224,697 to 1,225,575 _01158 MPMX26_01159: MPMX26_01159 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 1,225,586 to 1,225,912 _01159 MPMX26_01160: MPMX26_01160 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 1,225,912 to 1,226,532 _01160 MPMX26_01161: MPMX26_01161 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 1,226,537 to 1,228,519 _01161 Position (kb) 1225 1226 1227Strain fitness (log2 ratio) -1 0 1 2 3at 1224.928 kb on + strand, within MPMX26_01158at 1224.929 kb on - strand, within MPMX26_01158at 1224.939 kb on - strand, within MPMX26_01158at 1224.949 kb on - strand, within MPMX26_01158at 1224.967 kb on - strand, within MPMX26_01158at 1224.980 kb on - strand, within MPMX26_01158at 1225.077 kb on - strand, within MPMX26_01158at 1225.092 kb on - strand, within MPMX26_01158at 1225.092 kb on - strand, within MPMX26_01158at 1225.119 kb on + strand, within MPMX26_01158at 1225.207 kb on + strand, within MPMX26_01158at 1225.207 kb on + strand, within MPMX26_01158at 1225.215 kb on - strand, within MPMX26_01158at 1225.261 kb on - strand, within MPMX26_01158at 1225.261 kb on - strand, within MPMX26_01158at 1225.584 kb on + strandat 1225.584 kb on + strandat 1225.584 kb on + strandat 1225.592 kb on - strandat 1225.592 kb on - strandat 1225.652 kb on + strand, within MPMX26_01159at 1225.657 kb on + strand, within MPMX26_01159at 1225.660 kb on - strand, within MPMX26_01159at 1225.660 kb on - strand, within MPMX26_01159at 1225.660 kb on - strand, within MPMX26_01159at 1225.660 kb on - strand, within MPMX26_01159at 1225.701 kb on - strand, within MPMX26_01159at 1225.701 kb on - strand, within MPMX26_01159at 1225.734 kb on + strand, within MPMX26_01159at 1225.800 kb on + strand, within MPMX26_01159at 1225.831 kb on + strand, within MPMX26_01159at 1225.843 kb on + strand, within MPMX26_01159at 1225.843 kb on + strand, within MPMX26_01159at 1225.851 kb on - strand, within MPMX26_01159at 1225.851 kb on - strand, within MPMX26_01159at 1225.851 kb on - strand, within MPMX26_01159at 1225.851 kb on - strand, within MPMX26_01159at 1225.918 kb on - strandat 1225.959 kb on - strandat 1225.959 kb on - strandat 1225.961 kb on + strandat 1226.093 kb on + strand, within MPMX26_01160at 1226.093 kb on + strand, within MPMX26_01160at 1226.093 kb on + strand, within MPMX26_01160at 1226.101 kb on - strand, within MPMX26_01160at 1226.101 kb on - strand, within MPMX26_01160at 1226.111 kb on - strand, within MPMX26_01160at 1226.194 kb on - strand, within MPMX26_01160at 1226.293 kb on + strand, within MPMX26_01160at 1226.349 kb on + strand, within MPMX26_01160at 1226.381 kb on + strand, within MPMX26_01160at 1226.383 kb on + strand, within MPMX26_01160at 1226.391 kb on - strand, within MPMX26_01160at 1226.391 kb on - strand, within MPMX26_01160at 1226.391 kb on - strand, within MPMX26_01160at 1226.391 kb on - strand, within MPMX26_01160at 1226.536 kb on - strandat 1226.536 kb on - strandat 1226.543 kb on - strandat 1226.616 kb on - strandat 1226.651 kb on + strandat 1226.670 kb on + strandat 1226.702 kb on + strandat 1226.705 kb on - strandat 1226.714 kb on + strandat 1226.714 kb on + strandat 1226.722 kb on - strandat 1226.722 kb on - strandat 1226.724 kb on + strandat 1226.826 kb on + strand, within MPMX26_01161at 1226.852 kb on - strand, within MPMX26_01161at 1226.892 kb on + strand, within MPMX26_01161at 1226.892 kb on + strand, within MPMX26_01161at 1226.900 kb on - strand, within MPMX26_01161at 1226.900 kb on - strand, within MPMX26_01161at 1226.927 kb on - strand, within MPMX26_01161at 1226.927 kb on - strand, within MPMX26_01161at 1227.018 kb on + strand, within MPMX26_01161at 1227.021 kb on - strand, within MPMX26_01161at 1227.026 kb on - strand, within MPMX26_01161at 1227.071 kb on - strand, within MPMX26_01161at 1227.167 kb on - strand, within MPMX26_01161at 1227.181 kb on + strand, within MPMX26_01161at 1227.331 kb on - strand, within MPMX26_01161at 1227.331 kb on - strand, within MPMX26_01161at 1227.373 kb on - strand, within MPMX26_01161at 1227.380 kb on - strand, within MPMX26_01161at 1227.385 kb on + strand, within MPMX26_01161at 1227.509 kb on - strand, within MPMX26_01161at 1227.529 kb on + strand, within MPMX26_01161

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,224,928 + MPMX26_01158 0.26 -0.7
1,224,929 - MPMX26_01158 0.26 -0.1
1,224,939 - MPMX26_01158 0.28 +0.2
1,224,949 - MPMX26_01158 0.29 +1.5
1,224,967 - MPMX26_01158 0.31 +0.2
1,224,980 - MPMX26_01158 0.32 -0.3
1,225,077 - MPMX26_01158 0.43 +0.5
1,225,092 - MPMX26_01158 0.45 -0.1
1,225,092 - MPMX26_01158 0.45 -0.1
1,225,119 + MPMX26_01158 0.48 +0.5
1,225,207 + MPMX26_01158 0.58 -0.3
1,225,207 + MPMX26_01158 0.58 -0.1
1,225,215 - MPMX26_01158 0.59 +0.5
1,225,261 - MPMX26_01158 0.64 +0.5
1,225,261 - MPMX26_01158 0.64 -0.8
1,225,584 + +0.2
1,225,584 + -1.3
1,225,584 + -0.1
1,225,592 - +0.5
1,225,592 - +3.2
1,225,652 + MPMX26_01159 0.20 -0.3
1,225,657 + MPMX26_01159 0.22 +0.5
1,225,660 - MPMX26_01159 0.23 +1.5
1,225,660 - MPMX26_01159 0.23 +0.3
1,225,660 - MPMX26_01159 0.23 +0.9
1,225,660 - MPMX26_01159 0.23 -1.0
1,225,701 - MPMX26_01159 0.35 +0.5
1,225,701 - MPMX26_01159 0.35 -1.0
1,225,734 + MPMX26_01159 0.45 +1.5
1,225,800 + MPMX26_01159 0.65 +0.2
1,225,831 + MPMX26_01159 0.75 +1.8
1,225,843 + MPMX26_01159 0.79 +0.9
1,225,843 + MPMX26_01159 0.79 -0.1
1,225,851 - MPMX26_01159 0.81 +0.9
1,225,851 - MPMX26_01159 0.81 -0.1
1,225,851 - MPMX26_01159 0.81 -1.0
1,225,851 - MPMX26_01159 0.81 -0.1
1,225,918 - +1.8
1,225,959 - -0.5
1,225,959 - +0.2
1,225,961 + +0.2
1,226,093 + MPMX26_01160 0.29 +0.9
1,226,093 + MPMX26_01160 0.29 +0.2
1,226,093 + MPMX26_01160 0.29 -0.3
1,226,101 - MPMX26_01160 0.30 -0.5
1,226,101 - MPMX26_01160 0.30 -0.3
1,226,111 - MPMX26_01160 0.32 +1.5
1,226,194 - MPMX26_01160 0.45 -0.7
1,226,293 + MPMX26_01160 0.61 -0.1
1,226,349 + MPMX26_01160 0.70 +0.2
1,226,381 + MPMX26_01160 0.76 +2.5
1,226,383 + MPMX26_01160 0.76 -0.8
1,226,391 - MPMX26_01160 0.77 +0.5
1,226,391 - MPMX26_01160 0.77 -1.0
1,226,391 - MPMX26_01160 0.77 -0.5
1,226,391 - MPMX26_01160 0.77 +0.2
1,226,536 - +0.5
1,226,536 - -0.3
1,226,543 - +0.5
1,226,616 - +0.5
1,226,651 + -0.3
1,226,670 + -0.1
1,226,702 + +0.2
1,226,705 - +1.5
1,226,714 + -0.5
1,226,714 + +0.5
1,226,722 - +0.9
1,226,722 - +2.5
1,226,724 + -1.2
1,226,826 + MPMX26_01161 0.15 -0.3
1,226,852 - MPMX26_01161 0.16 +1.5
1,226,892 + MPMX26_01161 0.18 -1.3
1,226,892 + MPMX26_01161 0.18 +0.2
1,226,900 - MPMX26_01161 0.18 -0.3
1,226,900 - MPMX26_01161 0.18 -0.1
1,226,927 - MPMX26_01161 0.20 -0.7
1,226,927 - MPMX26_01161 0.20 +0.5
1,227,018 + MPMX26_01161 0.24 +0.5
1,227,021 - MPMX26_01161 0.24 -0.7
1,227,026 - MPMX26_01161 0.25 -0.1
1,227,071 - MPMX26_01161 0.27 +0.2
1,227,167 - MPMX26_01161 0.32 +0.5
1,227,181 + MPMX26_01161 0.32 +0.9
1,227,331 - MPMX26_01161 0.40 -0.1
1,227,331 - MPMX26_01161 0.40 -0.1
1,227,373 - MPMX26_01161 0.42 -0.7
1,227,380 - MPMX26_01161 0.43 +0.5
1,227,385 + MPMX26_01161 0.43 +0.2
1,227,509 - MPMX26_01161 0.49 +0.5
1,227,529 + MPMX26_01161 0.50 +1.5

Or see this region's nucleotide sequence