Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01158 and MPMX26_01159 are separated by 10 nucleotides MPMX26_01159 and MPMX26_01160 overlap by 1 nucleotides MPMX26_01160 and MPMX26_01161 are separated by 4 nucleotides
MPMX26_01158: MPMX26_01158 - Protoheme IX farnesyltransferase, at 1,224,697 to 1,225,575
_01158
MPMX26_01159: MPMX26_01159 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 1,225,586 to 1,225,912
_01159
MPMX26_01160: MPMX26_01160 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 1,225,912 to 1,226,532
_01160
MPMX26_01161: MPMX26_01161 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 1,226,537 to 1,228,519
_01161
Position (kb)
1225
1226
1227 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1224.928 kb on + strand, within MPMX26_01158 at 1224.929 kb on - strand, within MPMX26_01158 at 1224.939 kb on - strand, within MPMX26_01158 at 1224.949 kb on - strand, within MPMX26_01158 at 1224.967 kb on - strand, within MPMX26_01158 at 1224.980 kb on - strand, within MPMX26_01158 at 1225.077 kb on - strand, within MPMX26_01158 at 1225.092 kb on - strand, within MPMX26_01158 at 1225.092 kb on - strand, within MPMX26_01158 at 1225.119 kb on + strand, within MPMX26_01158 at 1225.207 kb on + strand, within MPMX26_01158 at 1225.207 kb on + strand, within MPMX26_01158 at 1225.215 kb on - strand, within MPMX26_01158 at 1225.261 kb on - strand, within MPMX26_01158 at 1225.261 kb on - strand, within MPMX26_01158 at 1225.584 kb on + strand at 1225.584 kb on + strand at 1225.584 kb on + strand at 1225.592 kb on - strand at 1225.592 kb on - strand at 1225.652 kb on + strand, within MPMX26_01159 at 1225.657 kb on + strand, within MPMX26_01159 at 1225.660 kb on - strand, within MPMX26_01159 at 1225.660 kb on - strand, within MPMX26_01159 at 1225.660 kb on - strand, within MPMX26_01159 at 1225.660 kb on - strand, within MPMX26_01159 at 1225.701 kb on - strand, within MPMX26_01159 at 1225.701 kb on - strand, within MPMX26_01159 at 1225.734 kb on + strand, within MPMX26_01159 at 1225.800 kb on + strand, within MPMX26_01159 at 1225.831 kb on + strand, within MPMX26_01159 at 1225.843 kb on + strand, within MPMX26_01159 at 1225.843 kb on + strand, within MPMX26_01159 at 1225.851 kb on - strand, within MPMX26_01159 at 1225.851 kb on - strand, within MPMX26_01159 at 1225.851 kb on - strand, within MPMX26_01159 at 1225.851 kb on - strand, within MPMX26_01159 at 1225.918 kb on - strand at 1225.959 kb on - strand at 1225.959 kb on - strand at 1225.961 kb on + strand at 1226.093 kb on + strand, within MPMX26_01160 at 1226.093 kb on + strand, within MPMX26_01160 at 1226.093 kb on + strand, within MPMX26_01160 at 1226.101 kb on - strand, within MPMX26_01160 at 1226.101 kb on - strand, within MPMX26_01160 at 1226.111 kb on - strand, within MPMX26_01160 at 1226.194 kb on - strand, within MPMX26_01160 at 1226.293 kb on + strand, within MPMX26_01160 at 1226.349 kb on + strand, within MPMX26_01160 at 1226.381 kb on + strand, within MPMX26_01160 at 1226.383 kb on + strand, within MPMX26_01160 at 1226.391 kb on - strand, within MPMX26_01160 at 1226.391 kb on - strand, within MPMX26_01160 at 1226.391 kb on - strand, within MPMX26_01160 at 1226.391 kb on - strand, within MPMX26_01160 at 1226.536 kb on - strand at 1226.536 kb on - strand at 1226.543 kb on - strand at 1226.616 kb on - strand at 1226.651 kb on + strand at 1226.670 kb on + strand at 1226.702 kb on + strand at 1226.705 kb on - strand at 1226.714 kb on + strand at 1226.714 kb on + strand at 1226.722 kb on - strand at 1226.722 kb on - strand at 1226.724 kb on + strand at 1226.826 kb on + strand, within MPMX26_01161 at 1226.852 kb on - strand, within MPMX26_01161 at 1226.892 kb on + strand, within MPMX26_01161 at 1226.892 kb on + strand, within MPMX26_01161 at 1226.900 kb on - strand, within MPMX26_01161 at 1226.900 kb on - strand, within MPMX26_01161 at 1226.927 kb on - strand, within MPMX26_01161 at 1226.927 kb on - strand, within MPMX26_01161 at 1227.018 kb on + strand, within MPMX26_01161 at 1227.021 kb on - strand, within MPMX26_01161 at 1227.026 kb on - strand, within MPMX26_01161 at 1227.071 kb on - strand, within MPMX26_01161 at 1227.167 kb on - strand, within MPMX26_01161 at 1227.181 kb on + strand, within MPMX26_01161 at 1227.331 kb on - strand, within MPMX26_01161 at 1227.331 kb on - strand, within MPMX26_01161 at 1227.373 kb on - strand, within MPMX26_01161 at 1227.380 kb on - strand, within MPMX26_01161 at 1227.385 kb on + strand, within MPMX26_01161 at 1227.509 kb on - strand, within MPMX26_01161 at 1227.529 kb on + strand, within MPMX26_01161
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,224,928 + MPMX26_01158 0.26 -0.7 1,224,929 - MPMX26_01158 0.26 -0.1 1,224,939 - MPMX26_01158 0.28 +0.2 1,224,949 - MPMX26_01158 0.29 +1.5 1,224,967 - MPMX26_01158 0.31 +0.2 1,224,980 - MPMX26_01158 0.32 -0.3 1,225,077 - MPMX26_01158 0.43 +0.5 1,225,092 - MPMX26_01158 0.45 -0.1 1,225,092 - MPMX26_01158 0.45 -0.1 1,225,119 + MPMX26_01158 0.48 +0.5 1,225,207 + MPMX26_01158 0.58 -0.3 1,225,207 + MPMX26_01158 0.58 -0.1 1,225,215 - MPMX26_01158 0.59 +0.5 1,225,261 - MPMX26_01158 0.64 +0.5 1,225,261 - MPMX26_01158 0.64 -0.8 1,225,584 + +0.2 1,225,584 + -1.3 1,225,584 + -0.1 1,225,592 - +0.5 1,225,592 - +3.2 1,225,652 + MPMX26_01159 0.20 -0.3 1,225,657 + MPMX26_01159 0.22 +0.5 1,225,660 - MPMX26_01159 0.23 +1.5 1,225,660 - MPMX26_01159 0.23 +0.3 1,225,660 - MPMX26_01159 0.23 +0.9 1,225,660 - MPMX26_01159 0.23 -1.0 1,225,701 - MPMX26_01159 0.35 +0.5 1,225,701 - MPMX26_01159 0.35 -1.0 1,225,734 + MPMX26_01159 0.45 +1.5 1,225,800 + MPMX26_01159 0.65 +0.2 1,225,831 + MPMX26_01159 0.75 +1.8 1,225,843 + MPMX26_01159 0.79 +0.9 1,225,843 + MPMX26_01159 0.79 -0.1 1,225,851 - MPMX26_01159 0.81 +0.9 1,225,851 - MPMX26_01159 0.81 -0.1 1,225,851 - MPMX26_01159 0.81 -1.0 1,225,851 - MPMX26_01159 0.81 -0.1 1,225,918 - +1.8 1,225,959 - -0.5 1,225,959 - +0.2 1,225,961 + +0.2 1,226,093 + MPMX26_01160 0.29 +0.9 1,226,093 + MPMX26_01160 0.29 +0.2 1,226,093 + MPMX26_01160 0.29 -0.3 1,226,101 - MPMX26_01160 0.30 -0.5 1,226,101 - MPMX26_01160 0.30 -0.3 1,226,111 - MPMX26_01160 0.32 +1.5 1,226,194 - MPMX26_01160 0.45 -0.7 1,226,293 + MPMX26_01160 0.61 -0.1 1,226,349 + MPMX26_01160 0.70 +0.2 1,226,381 + MPMX26_01160 0.76 +2.5 1,226,383 + MPMX26_01160 0.76 -0.8 1,226,391 - MPMX26_01160 0.77 +0.5 1,226,391 - MPMX26_01160 0.77 -1.0 1,226,391 - MPMX26_01160 0.77 -0.5 1,226,391 - MPMX26_01160 0.77 +0.2 1,226,536 - +0.5 1,226,536 - -0.3 1,226,543 - +0.5 1,226,616 - +0.5 1,226,651 + -0.3 1,226,670 + -0.1 1,226,702 + +0.2 1,226,705 - +1.5 1,226,714 + -0.5 1,226,714 + +0.5 1,226,722 - +0.9 1,226,722 - +2.5 1,226,724 + -1.2 1,226,826 + MPMX26_01161 0.15 -0.3 1,226,852 - MPMX26_01161 0.16 +1.5 1,226,892 + MPMX26_01161 0.18 -1.3 1,226,892 + MPMX26_01161 0.18 +0.2 1,226,900 - MPMX26_01161 0.18 -0.3 1,226,900 - MPMX26_01161 0.18 -0.1 1,226,927 - MPMX26_01161 0.20 -0.7 1,226,927 - MPMX26_01161 0.20 +0.5 1,227,018 + MPMX26_01161 0.24 +0.5 1,227,021 - MPMX26_01161 0.24 -0.7 1,227,026 - MPMX26_01161 0.25 -0.1 1,227,071 - MPMX26_01161 0.27 +0.2 1,227,167 - MPMX26_01161 0.32 +0.5 1,227,181 + MPMX26_01161 0.32 +0.9 1,227,331 - MPMX26_01161 0.40 -0.1 1,227,331 - MPMX26_01161 0.40 -0.1 1,227,373 - MPMX26_01161 0.42 -0.7 1,227,380 - MPMX26_01161 0.43 +0.5 1,227,385 + MPMX26_01161 0.43 +0.2 1,227,509 - MPMX26_01161 0.49 +0.5 1,227,529 + MPMX26_01161 0.50 +1.5
Or see this region's nucleotide sequence