Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF976

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF975 and GFF976 are separated by 81 nucleotidesGFF976 and GFF977 are separated by 18 nucleotides GFF975 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 711,734 to 712,900 GFF975 GFF976 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 712,982 to 714,148 GFF976 GFF977 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 714,167 to 716,221 GFF977 Position (kb) 712 713 714 715Strain fitness (log2 ratio) -2 -1 0 1at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.990 kb on - strand, within GFF975at 711.990 kb on - strand, within GFF975at 712.117 kb on - strand, within GFF975at 712.117 kb on - strand, within GFF975at 712.191 kb on + strand, within GFF975at 712.284 kb on + strand, within GFF975at 712.285 kb on - strand, within GFF975at 712.285 kb on - strand, within GFF975at 712.386 kb on + strand, within GFF975at 712.386 kb on + strand, within GFF975at 712.387 kb on - strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.502 kb on + strand, within GFF975at 712.503 kb on - strand, within GFF975at 712.530 kb on - strand, within GFF975at 712.571 kb on + strand, within GFF975at 712.572 kb on - strand, within GFF975at 712.572 kb on - strand, within GFF975at 712.838 kb on + strandat 712.839 kb on - strandat 712.894 kb on + strandat 712.894 kb on + strandat 712.894 kb on + strandat 712.895 kb on - strandat 712.936 kb on - strandat 712.994 kb on - strandat 712.994 kb on - strandat 713.082 kb on + strandat 713.098 kb on - strandat 713.110 kb on - strand, within GFF976at 713.116 kb on - strand, within GFF976at 713.175 kb on + strand, within GFF976at 713.175 kb on + strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.220 kb on + strand, within GFF976at 713.297 kb on - strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.357 kb on + strand, within GFF976at 713.357 kb on + strand, within GFF976at 713.436 kb on + strand, within GFF976at 713.437 kb on - strand, within GFF976at 713.474 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.581 kb on - strand, within GFF976at 713.581 kb on - strand, within GFF976at 713.703 kb on + strand, within GFF976at 713.703 kb on + strand, within GFF976at 713.704 kb on - strand, within GFF976at 713.974 kb on - strand, within GFF976at 714.113 kb on + strandat 714.114 kb on - strandat 714.351 kb on - strandat 714.397 kb on - strand, within GFF977at 714.466 kb on + strand, within GFF977at 714.466 kb on + strand, within GFF977at 714.467 kb on - strand, within GFF977at 714.467 kb on - strand, within GFF977at 714.467 kb on - strand, within GFF977at 714.575 kb on - strand, within GFF977at 714.631 kb on + strand, within GFF977at 714.631 kb on + strand, within GFF977at 714.665 kb on + strand, within GFF977at 714.665 kb on + strand, within GFF977at 714.665 kb on + strand, within GFF977at 714.665 kb on + strand, within GFF977at 714.666 kb on - strand, within GFF977at 714.744 kb on + strand, within GFF977at 714.745 kb on - strand, within GFF977at 714.745 kb on - strand, within GFF977at 714.839 kb on + strand, within GFF977at 714.839 kb on + strand, within GFF977at 714.839 kb on + strand, within GFF977at 714.839 kb on + strand, within GFF977at 714.963 kb on - strand, within GFF977

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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711,989 + GFF975 0.22 -1.1
711,989 + GFF975 0.22 +0.1
711,989 + GFF975 0.22 -0.3
711,989 + GFF975 0.22 +1.1
711,990 - GFF975 0.22 -2.1
711,990 - GFF975 0.22 +1.4
712,117 - GFF975 0.33 +0.2
712,117 - GFF975 0.33 -0.2
712,191 + GFF975 0.39 +0.3
712,284 + GFF975 0.47 -0.3
712,285 - GFF975 0.47 -1.4
712,285 - GFF975 0.47 -0.7
712,386 + GFF975 0.56 -0.4
712,386 + GFF975 0.56 -0.2
712,387 - GFF975 0.56 +0.8
712,412 + GFF975 0.58 -0.4
712,412 + GFF975 0.58 +0.0
712,412 + GFF975 0.58 -1.0
712,412 + GFF975 0.58 +0.3
712,412 + GFF975 0.58 +1.3
712,413 - GFF975 0.58 +0.5
712,413 - GFF975 0.58 -0.3
712,413 - GFF975 0.58 +0.3
712,413 - GFF975 0.58 -0.3
712,413 - GFF975 0.58 -0.9
712,426 - GFF975 0.59 -1.2
712,426 - GFF975 0.59 +0.7
712,426 - GFF975 0.59 +0.3
712,433 + GFF975 0.60 +0.5
712,433 + GFF975 0.60 -0.5
712,433 + GFF975 0.60 +0.8
712,433 + GFF975 0.60 +0.2
712,433 + GFF975 0.60 +0.2
712,433 + GFF975 0.60 -1.2
712,433 + GFF975 0.60 -0.2
712,434 - GFF975 0.60 -0.1
712,434 - GFF975 0.60 +1.1
712,434 - GFF975 0.60 -1.1
712,502 + GFF975 0.66 +0.3
712,503 - GFF975 0.66 -0.1
712,530 - GFF975 0.68 -0.7
712,571 + GFF975 0.72 -0.1
712,572 - GFF975 0.72 +0.3
712,572 - GFF975 0.72 +0.1
712,838 + -0.3
712,839 - -0.9
712,894 + -0.0
712,894 + -0.1
712,894 + +0.4
712,895 - -0.0
712,936 - +0.1
712,994 - -0.5
712,994 - +0.3
713,082 + -0.1
713,098 - -1.3
713,110 - GFF976 0.11 -0.9
713,116 - GFF976 0.11 +0.1
713,175 + GFF976 0.17 +0.7
713,175 + GFF976 0.17 -1.8
713,176 - GFF976 0.17 -0.5
713,176 - GFF976 0.17 -0.5
713,176 - GFF976 0.17 -0.7
713,220 + GFF976 0.20 -0.3
713,297 - GFF976 0.27 -0.5
713,346 + GFF976 0.31 -2.1
713,346 + GFF976 0.31 +0.1
713,346 + GFF976 0.31 +0.4
713,347 - GFF976 0.31 +0.1
713,347 - GFF976 0.31 +0.5
713,347 - GFF976 0.31 +0.0
713,357 + GFF976 0.32 -0.1
713,357 + GFF976 0.32 +0.8
713,436 + GFF976 0.39 -0.7
713,437 - GFF976 0.39 +0.5
713,474 + GFF976 0.42 -0.4
713,580 + GFF976 0.51 +0.3
713,580 + GFF976 0.51 +0.1
713,580 + GFF976 0.51 -0.3
713,581 - GFF976 0.51 -0.1
713,581 - GFF976 0.51 +0.3
713,703 + GFF976 0.62 -0.2
713,703 + GFF976 0.62 -0.9
713,704 - GFF976 0.62 +0.3
713,974 - GFF976 0.85 -0.9
714,113 + -0.5
714,114 - -0.9
714,351 - +0.5
714,397 - GFF977 0.11 +0.3
714,466 + GFF977 0.15 +0.3
714,466 + GFF977 0.15 -0.3
714,467 - GFF977 0.15 -0.4
714,467 - GFF977 0.15 -0.0
714,467 - GFF977 0.15 -1.5
714,575 - GFF977 0.20 -1.9
714,631 + GFF977 0.23 +1.1
714,631 + GFF977 0.23 -0.6
714,665 + GFF977 0.24 -0.7
714,665 + GFF977 0.24 -0.1
714,665 + GFF977 0.24 +0.3
714,665 + GFF977 0.24 +0.7
714,666 - GFF977 0.24 -0.3
714,744 + GFF977 0.28 +1.5
714,745 - GFF977 0.28 -2.0
714,745 - GFF977 0.28 +1.2
714,839 + GFF977 0.33 -2.1
714,839 + GFF977 0.33 +0.5
714,839 + GFF977 0.33 +0.5
714,839 + GFF977 0.33 +0.8
714,963 - GFF977 0.39 -0.4

Or see this region's nucleotide sequence