Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF876 and GFF877 are separated by 78 nucleotides GFF877 and GFF878 are separated by 247 nucleotides GFF878 and GFF879 are separated by 64 nucleotides
GFF876 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 601,468 to 602,676
GFF876
GFF877 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 602,755 to 603,891
GFF877
GFF878 - Acyclic terpenes utilization regulator AtuR, TetR family, at 604,139 to 604,648
GFF878
GFF879 - Electron transfer flavoprotein, beta subunit, at 604,713 to 605,462
GFF879
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1 at 601.986 kb on - strand, within GFF876 at 602.171 kb on + strand, within GFF876 at 602.171 kb on + strand, within GFF876 at 602.171 kb on + strand, within GFF876 at 602.202 kb on - strand, within GFF876 at 602.246 kb on + strand, within GFF876 at 602.246 kb on + strand, within GFF876 at 602.246 kb on + strand, within GFF876 at 602.561 kb on - strand at 602.756 kb on + strand at 602.757 kb on - strand at 602.757 kb on - strand at 602.927 kb on + strand, within GFF877 at 602.928 kb on - strand, within GFF877 at 602.928 kb on - strand, within GFF877 at 603.600 kb on - strand, within GFF877 at 603.600 kb on - strand, within GFF877 at 603.600 kb on - strand, within GFF877 at 603.693 kb on + strand, within GFF877 at 603.711 kb on - strand, within GFF877 at 603.811 kb on + strand at 603.811 kb on + strand at 603.811 kb on + strand at 603.811 kb on + strand at 603.812 kb on - strand at 603.812 kb on - strand at 603.812 kb on - strand at 604.032 kb on + strand at 604.033 kb on - strand at 604.035 kb on + strand at 604.036 kb on - strand at 604.036 kb on - strand at 604.036 kb on - strand at 604.037 kb on + strand at 604.037 kb on + strand at 604.373 kb on + strand, within GFF878 at 604.374 kb on - strand, within GFF878 at 604.374 kb on - strand, within GFF878 at 604.374 kb on - strand, within GFF878 at 604.433 kb on + strand, within GFF878 at 604.434 kb on - strand, within GFF878 at 604.598 kb on + strand at 604.598 kb on + strand at 604.599 kb on - strand at 604.599 kb on - strand at 604.673 kb on + strand at 604.709 kb on + strand at 604.720 kb on + strand at 604.720 kb on + strand at 604.721 kb on - strand at 604.749 kb on + strand at 604.749 kb on + strand at 604.749 kb on + strand at 604.750 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 601,986 - GFF876 0.43 +0.0 602,171 + GFF876 0.58 +0.5 602,171 + GFF876 0.58 +0.1 602,171 + GFF876 0.58 -0.1 602,202 - GFF876 0.61 +1.3 602,246 + GFF876 0.64 +0.0 602,246 + GFF876 0.64 +0.5 602,246 + GFF876 0.64 -0.4 602,561 - +0.1 602,756 + -0.1 602,757 - -0.5 602,757 - -0.6 602,927 + GFF877 0.15 -0.1 602,928 - GFF877 0.15 -0.7 602,928 - GFF877 0.15 -0.1 603,600 - GFF877 0.74 -0.4 603,600 - GFF877 0.74 -0.4 603,600 - GFF877 0.74 -2.4 603,693 + GFF877 0.82 +0.1 603,711 - GFF877 0.84 +0.6 603,811 + +0.2 603,811 + -1.2 603,811 + +0.4 603,811 + -2.4 603,812 - -0.3 603,812 - +1.3 603,812 - -2.1 604,032 + -1.9 604,033 - +0.8 604,035 + +0.2 604,036 - +0.3 604,036 - +0.0 604,036 - -0.1 604,037 + -0.4 604,037 + +0.1 604,373 + GFF878 0.46 -0.8 604,374 - GFF878 0.46 +0.0 604,374 - GFF878 0.46 -1.0 604,374 - GFF878 0.46 -0.3 604,433 + GFF878 0.58 +0.2 604,434 - GFF878 0.58 +0.5 604,598 + -0.8 604,598 + -0.4 604,599 - +1.5 604,599 - +0.1 604,673 + -0.1 604,709 + -0.1 604,720 + -2.0 604,720 + -0.7 604,721 - -0.0 604,749 + -0.6 604,749 + +0.5 604,749 + -1.3 604,750 - -1.3
Or see this region's nucleotide sequence