Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF861

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF860 and GFF861 are separated by 346 nucleotidesGFF861 and GFF862 are separated by 661 nucleotides GFF860 - hypothetical protein, at 579,437 to 579,754 GFF860 GFF861 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 580,101 to 580,883 GFF861 GFF862 - Possible monoamine oxidase, at 581,545 to 582,606 GFF862 Position (kb) 580 581Strain fitness (log2 ratio) -2 -1 0 1at 579.147 kb on + strandat 579.148 kb on - strandat 579.148 kb on - strandat 579.148 kb on - strandat 579.148 kb on - strandat 579.402 kb on + strandat 579.402 kb on + strandat 579.403 kb on - strandat 579.757 kb on + strandat 580.162 kb on + strandat 580.195 kb on - strand, within GFF861at 580.557 kb on + strand, within GFF861at 580.557 kb on + strand, within GFF861at 580.557 kb on + strand, within GFF861at 580.558 kb on - strand, within GFF861at 580.629 kb on + strand, within GFF861at 580.629 kb on + strand, within GFF861at 580.629 kb on + strand, within GFF861at 580.630 kb on - strand, within GFF861at 580.630 kb on - strand, within GFF861at 580.807 kb on + strandat 580.807 kb on + strandat 580.807 kb on + strandat 580.807 kb on + strandat 580.808 kb on - strandat 580.815 kb on - strandat 580.815 kb on - strandat 580.881 kb on + strandat 580.881 kb on + strandat 580.882 kb on - strandat 580.921 kb on + strandat 580.921 kb on + strandat 580.921 kb on + strandat 580.922 kb on - strandat 580.973 kb on - strandat 581.034 kb on - strandat 581.086 kb on + strandat 581.087 kb on - strandat 581.362 kb on + strandat 581.362 kb on + strandat 581.362 kb on + strandat 581.363 kb on - strandat 581.458 kb on + strandat 581.458 kb on + strandat 581.458 kb on + strandat 581.458 kb on + strandat 581.459 kb on - strandat 581.459 kb on - strandat 581.459 kb on - strandat 581.459 kb on - strandat 581.554 kb on + strandat 581.554 kb on + strandat 581.554 kb on + strandat 581.554 kb on + strandat 581.554 kb on + strandat 581.554 kb on + strandat 581.554 kb on + strandat 581.555 kb on - strandat 581.555 kb on - strandat 581.555 kb on - strandat 581.555 kb on - strandat 581.555 kb on - strandat 581.555 kb on - strandat 581.563 kb on + strandat 581.563 kb on + strandat 581.564 kb on - strandat 581.564 kb on - strandat 581.609 kb on + strandat 581.609 kb on + strandat 581.609 kb on + strandat 581.610 kb on - strandat 581.610 kb on - strandat 581.610 kb on - strandat 581.610 kb on - strandat 581.610 kb on - strandat 581.622 kb on + strandat 581.622 kb on + strandat 581.694 kb on - strand, within GFF862at 581.694 kb on - strand, within GFF862at 581.750 kb on + strand, within GFF862at 581.750 kb on + strand, within GFF862at 581.750 kb on + strand, within GFF862at 581.750 kb on + strand, within GFF862at 581.751 kb on - strand, within GFF862at 581.751 kb on - strand, within GFF862at 581.751 kb on - strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.775 kb on + strand, within GFF862at 581.776 kb on - strand, within GFF862at 581.776 kb on - strand, within GFF862at 581.776 kb on - strand, within GFF862at 581.776 kb on - strand, within GFF862at 581.776 kb on - strand, within GFF862at 581.776 kb on - strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.824 kb on + strand, within GFF862at 581.825 kb on - strand, within GFF862at 581.825 kb on - strand, within GFF862at 581.825 kb on - strand, within GFF862at 581.825 kb on - strand, within GFF862at 581.825 kb on - strand, within GFF862at 581.825 kb on - strand, within GFF862at 581.825 kb on - strand, within GFF862

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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579,147 + +1.5
579,148 - +1.2
579,148 - +0.6
579,148 - -0.4
579,148 - -1.7
579,402 + +0.1
579,402 + +0.0
579,403 - +0.1
579,757 + +0.4
580,162 + -0.6
580,195 - GFF861 0.12 -0.1
580,557 + GFF861 0.58 -0.4
580,557 + GFF861 0.58 -1.0
580,557 + GFF861 0.58 -0.4
580,558 - GFF861 0.58 -0.3
580,629 + GFF861 0.67 -1.3
580,629 + GFF861 0.67 +0.1
580,629 + GFF861 0.67 +0.1
580,630 - GFF861 0.68 -1.0
580,630 - GFF861 0.68 +0.3
580,807 + -0.3
580,807 + +0.1
580,807 + +0.1
580,807 + +0.3
580,808 - +0.2
580,815 - +0.7
580,815 - +0.7
580,881 + +0.0
580,881 + +0.0
580,882 - +0.2
580,921 + +0.4
580,921 + +0.4
580,921 + +0.5
580,922 - -0.1
580,973 - -0.2
581,034 - -0.2
581,086 + -0.6
581,087 - +0.7
581,362 + -0.6
581,362 + +0.1
581,362 + -0.1
581,363 - -2.7
581,458 + -0.3
581,458 + -0.5
581,458 + -0.3
581,458 + -0.0
581,459 - -0.7
581,459 - -1.8
581,459 - -0.5
581,459 - -0.8
581,554 + +0.1
581,554 + +1.5
581,554 + +0.2
581,554 + -0.9
581,554 + +0.1
581,554 + +0.7
581,554 + -1.0
581,555 - +0.2
581,555 - +0.1
581,555 - -0.2
581,555 - -0.4
581,555 - +0.4
581,555 - +0.7
581,563 + +0.6
581,563 + -0.2
581,564 - -0.2
581,564 - +0.1
581,609 + -0.5
581,609 + -0.8
581,609 + -0.1
581,610 - +0.1
581,610 - +0.0
581,610 - +0.2
581,610 - -0.8
581,610 - +0.5
581,622 + +0.4
581,622 + +0.5
581,694 - GFF862 0.14 +0.5
581,694 - GFF862 0.14 -0.3
581,750 + GFF862 0.19 +0.1
581,750 + GFF862 0.19 -0.2
581,750 + GFF862 0.19 -0.0
581,750 + GFF862 0.19 -0.7
581,751 - GFF862 0.19 +0.2
581,751 - GFF862 0.19 -0.6
581,751 - GFF862 0.19 -1.0
581,775 + GFF862 0.22 -0.3
581,775 + GFF862 0.22 +0.1
581,775 + GFF862 0.22 +0.6
581,775 + GFF862 0.22 +0.5
581,775 + GFF862 0.22 +0.4
581,775 + GFF862 0.22 +0.3
581,775 + GFF862 0.22 +0.4
581,775 + GFF862 0.22 -0.4
581,775 + GFF862 0.22 +0.7
581,775 + GFF862 0.22 +0.3
581,776 - GFF862 0.22 +0.1
581,776 - GFF862 0.22 +0.5
581,776 - GFF862 0.22 -1.3
581,776 - GFF862 0.22 -0.4
581,776 - GFF862 0.22 +0.6
581,776 - GFF862 0.22 -0.0
581,824 + GFF862 0.26 -1.0
581,824 + GFF862 0.26 -1.0
581,824 + GFF862 0.26 +1.1
581,824 + GFF862 0.26 -0.1
581,824 + GFF862 0.26 +0.5
581,824 + GFF862 0.26 -0.4
581,824 + GFF862 0.26 +0.6
581,824 + GFF862 0.26 +0.1
581,824 + GFF862 0.26 -0.2
581,824 + GFF862 0.26 +0.8
581,825 - GFF862 0.26 -2.6
581,825 - GFF862 0.26 -0.3
581,825 - GFF862 0.26 +0.9
581,825 - GFF862 0.26 -0.1
581,825 - GFF862 0.26 -2.0
581,825 - GFF862 0.26 +0.2
581,825 - GFF862 0.26 -0.3

Or see this region's nucleotide sequence