Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF844 and GFF845 are separated by 225 nucleotides GFF845 and GFF846 are separated by 329 nucleotides GFF846 and GFF847 are separated by 824 nucleotides
GFF844 - hypothetical protein, at 548,481 to 548,726
GFF844
GFF845 - Prevent host death protein, Phd antitoxin # C, at 548,952 to 549,251
GFF845
GFF846 - hypothetical protein, at 549,581 to 550,774
GFF846
GFF847 - hypothetical protein, at 551,599 to 552,078
GFF847
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1 at 548.696 kb on + strand, within GFF844 at 548.696 kb on + strand, within GFF844 at 548.696 kb on + strand, within GFF844 at 548.697 kb on - strand, within GFF844 at 548.803 kb on - strand at 548.803 kb on - strand at 548.803 kb on - strand at 548.815 kb on + strand at 548.816 kb on - strand at 548.816 kb on - strand at 548.816 kb on - strand at 548.890 kb on + strand at 548.891 kb on - strand at 548.891 kb on - strand at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.244 kb on + strand at 549.244 kb on + strand at 549.244 kb on + strand at 549.244 kb on + strand at 549.244 kb on + strand at 549.244 kb on + strand at 549.245 kb on - strand at 549.245 kb on - strand at 549.356 kb on - strand at 549.356 kb on - strand at 549.423 kb on + strand at 549.585 kb on + strand at 549.586 kb on - strand at 549.687 kb on + strand at 549.688 kb on - strand at 549.688 kb on - strand at 549.688 kb on - strand at 549.826 kb on - strand, within GFF846 at 549.826 kb on - strand, within GFF846 at 549.826 kb on - strand, within GFF846 at 549.897 kb on + strand, within GFF846 at 549.897 kb on + strand, within GFF846 at 549.898 kb on - strand, within GFF846 at 549.900 kb on + strand, within GFF846 at 550.358 kb on + strand, within GFF846 at 550.358 kb on + strand, within GFF846 at 550.442 kb on + strand, within GFF846 at 550.442 kb on + strand, within GFF846 at 550.443 kb on - strand, within GFF846 at 550.443 kb on - strand, within GFF846 at 550.443 kb on - strand, within GFF846 at 550.448 kb on + strand, within GFF846 at 550.448 kb on + strand, within GFF846 at 550.507 kb on + strand, within GFF846 at 550.593 kb on + strand, within GFF846 at 550.594 kb on - strand, within GFF846 at 550.594 kb on - strand, within GFF846 at 550.863 kb on + strand at 550.863 kb on + strand at 550.863 kb on + strand at 550.863 kb on + strand at 550.863 kb on + strand at 550.863 kb on + strand at 550.863 kb on + strand at 550.863 kb on + strand at 550.864 kb on - strand at 550.864 kb on - strand at 550.864 kb on - strand at 550.864 kb on - strand at 550.864 kb on - strand at 551.008 kb on + strand at 551.034 kb on + strand at 551.034 kb on + strand at 551.054 kb on + strand at 551.054 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 548,696 + GFF844 0.87 -0.8 548,696 + GFF844 0.87 -1.4 548,696 + GFF844 0.87 -0.3 548,697 - GFF844 0.88 +0.8 548,803 - -1.7 548,803 - +0.4 548,803 - -0.2 548,815 + +1.4 548,816 - +0.1 548,816 - -0.9 548,816 - -1.6 548,890 + +0.0 548,891 - -1.4 548,891 - -0.5 549,035 - GFF845 0.28 +0.8 549,035 - GFF845 0.28 +1.0 549,035 - GFF845 0.28 -2.1 549,035 - GFF845 0.28 -0.3 549,035 - GFF845 0.28 +1.1 549,244 + +0.1 549,244 + +0.2 549,244 + -0.8 549,244 + -0.1 549,244 + +0.4 549,244 + +0.2 549,245 - -0.3 549,245 - +0.6 549,356 - -1.7 549,356 - +0.5 549,423 + -1.0 549,585 + -1.0 549,586 - +0.2 549,687 + -0.0 549,688 - -1.0 549,688 - +0.9 549,688 - -0.4 549,826 - GFF846 0.21 -0.2 549,826 - GFF846 0.21 +0.1 549,826 - GFF846 0.21 -1.1 549,897 + GFF846 0.26 +0.9 549,897 + GFF846 0.26 -0.4 549,898 - GFF846 0.27 -0.7 549,900 + GFF846 0.27 -0.2 550,358 + GFF846 0.65 +0.4 550,358 + GFF846 0.65 -0.2 550,442 + GFF846 0.72 -0.0 550,442 + GFF846 0.72 -0.9 550,443 - GFF846 0.72 -1.5 550,443 - GFF846 0.72 -0.2 550,443 - GFF846 0.72 -0.5 550,448 + GFF846 0.73 -1.1 550,448 + GFF846 0.73 -0.1 550,507 + GFF846 0.78 -0.4 550,593 + GFF846 0.85 +0.5 550,594 - GFF846 0.85 -1.6 550,594 - GFF846 0.85 -1.1 550,863 + -0.2 550,863 + -0.3 550,863 + +0.1 550,863 + +0.3 550,863 + -0.2 550,863 + +1.1 550,863 + -1.1 550,863 + -0.1 550,864 - -0.1 550,864 - +1.0 550,864 - -0.5 550,864 - +0.1 550,864 - +0.2 551,008 + +0.5 551,034 + +0.7 551,034 + +0.3 551,054 + +0.0 551,054 + +0.2
Or see this region's nucleotide sequence