Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF788 and GFF789 are separated by 48 nucleotides GFF789 and GFF790 are separated by 64 nucleotides GFF790 and GFF791 are separated by 13 nucleotides
GFF788 - Tricarboxylate transport protein TctC, at 483,895 to 484,872
GFF788
GFF789 - hypothetical protein, at 484,921 to 485,799
GFF789
GFF790 - Probable lipoprotein, at 485,864 to 486,358
GFF790
GFF791 - Aldose 1-epimerase (EC 5.1.3.3), at 486,372 to 487,430
GFF791
Position (kb) 485
486
487 Strain fitness (log2 ratio) -1
0
1
2 at 485.521 kb on + strand, within GFF789 at 485.522 kb on - strand, within GFF789 at 485.683 kb on + strand, within GFF789 at 486.042 kb on - strand, within GFF790 at 486.219 kb on - strand, within GFF790 at 486.219 kb on - strand, within GFF790 at 486.410 kb on - strand at 486.568 kb on + strand, within GFF791 at 486.568 kb on + strand, within GFF791 at 486.568 kb on + strand, within GFF791 at 486.569 kb on - strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.872 kb on - strand, within GFF791 at 486.962 kb on - strand, within GFF791 at 487.238 kb on - strand, within GFF791
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 485,521 + GFF789 0.68 -0.4 485,522 - GFF789 0.68 +0.0 485,683 + GFF789 0.87 -0.1 486,042 - GFF790 0.36 +0.1 486,219 - GFF790 0.72 -0.1 486,219 - GFF790 0.72 -0.2 486,410 - -0.8 486,568 + GFF791 0.19 +2.2 486,568 + GFF791 0.19 +0.1 486,568 + GFF791 0.19 -0.3 486,569 - GFF791 0.19 -0.4 486,679 + GFF791 0.29 -0.0 486,679 + GFF791 0.29 +0.4 486,679 + GFF791 0.29 +0.1 486,679 + GFF791 0.29 +1.0 486,679 + GFF791 0.29 +0.2 486,679 + GFF791 0.29 +0.5 486,680 - GFF791 0.29 +0.2 486,680 - GFF791 0.29 -0.2 486,680 - GFF791 0.29 +0.2 486,680 - GFF791 0.29 +0.3 486,680 - GFF791 0.29 +0.3 486,680 - GFF791 0.29 +0.7 486,680 - GFF791 0.29 +0.5 486,872 - GFF791 0.47 -0.5 486,962 - GFF791 0.56 +0.8 487,238 - GFF791 0.82 -0.2
Or see this region's nucleotide sequence