Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF623 and GFF624 overlap by 4 nucleotides GFF624 and GFF625 are separated by 26 nucleotides
GFF623 - protease, putative, at 298,940 to 300,754
GFF623
GFF624 - Thiol:disulfide interchange protein DsbC, at 300,751 to 301,464
GFF624
GFF625 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 301,491 to 302,594
GFF625
Position (kb) 300
301
302 Strain fitness (log2 ratio) -2
-1
0
1 at 299.793 kb on + strand, within GFF623 at 299.794 kb on - strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.850 kb on + strand, within GFF623 at 299.851 kb on - strand, within GFF623 at 299.995 kb on - strand, within GFF623 at 300.012 kb on + strand, within GFF623 at 300.013 kb on - strand, within GFF623 at 300.013 kb on - strand, within GFF623 at 300.027 kb on + strand, within GFF623 at 300.027 kb on + strand, within GFF623 at 300.229 kb on - strand, within GFF623 at 300.266 kb on + strand, within GFF623 at 300.267 kb on - strand, within GFF623 at 300.588 kb on + strand at 300.589 kb on - strand at 300.589 kb on - strand at 301.019 kb on + strand, within GFF624 at 301.257 kb on - strand, within GFF624 at 301.277 kb on + strand, within GFF624 at 301.277 kb on + strand, within GFF624 at 301.277 kb on + strand, within GFF624 at 301.310 kb on + strand, within GFF624 at 301.310 kb on + strand, within GFF624 at 301.311 kb on - strand, within GFF624 at 301.311 kb on - strand, within GFF624 at 301.311 kb on - strand, within GFF624 at 301.311 kb on - strand, within GFF624 at 301.311 kb on - strand, within GFF624
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 299,793 + GFF623 0.47 -0.0 299,794 - GFF623 0.47 +0.1 299,850 + GFF623 0.50 +0.7 299,850 + GFF623 0.50 +1.2 299,850 + GFF623 0.50 -1.8 299,850 + GFF623 0.50 +1.0 299,851 - GFF623 0.50 -1.9 299,995 - GFF623 0.58 +0.0 300,012 + GFF623 0.59 -0.8 300,013 - GFF623 0.59 -0.1 300,013 - GFF623 0.59 -0.2 300,027 + GFF623 0.60 +0.8 300,027 + GFF623 0.60 +0.4 300,229 - GFF623 0.71 +0.4 300,266 + GFF623 0.73 +0.4 300,267 - GFF623 0.73 -0.3 300,588 + +0.7 300,589 - +0.7 300,589 - -0.1 301,019 + GFF624 0.38 -0.9 301,257 - GFF624 0.71 -2.2 301,277 + GFF624 0.74 +0.0 301,277 + GFF624 0.74 -1.0 301,277 + GFF624 0.74 -0.5 301,310 + GFF624 0.78 -0.9 301,310 + GFF624 0.78 -0.6 301,311 - GFF624 0.78 +0.5 301,311 - GFF624 0.78 +0.5 301,311 - GFF624 0.78 -1.6 301,311 - GFF624 0.78 +1.2 301,311 - GFF624 0.78 -1.6
Or see this region's nucleotide sequence