Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF593

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF592 and GFF593 are separated by 141 nucleotidesGFF593 and GFF594 are separated by 378 nucleotides GFF592 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 263,662 to 264,846 GFF592 GFF593 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 264,988 to 267,939 GFF593 GFF594 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD, at 268,318 to 268,941 GFF594 GFF595 - two component, sigma54 specific, transcriptional regulator, Fis family, at 268,922 to 270,427 GFF595 Position (kb) 264 265 266 267 268Strain fitness (log2 ratio) -2 -1 0 1at 264.950 kb on + strandat 268.064 kb on + strandat 268.088 kb on + strandat 268.088 kb on + strandat 268.089 kb on - strandat 268.089 kb on - strandat 268.118 kb on + strandat 268.517 kb on + strand, within GFF594at 268.778 kb on + strand, within GFF594

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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264,950 + +0.2
268,064 + -0.5
268,088 + -0.4
268,088 + -0.8
268,089 - -0.3
268,089 - -0.4
268,118 + -1.6
268,517 + GFF594 0.32 -2.7
268,778 + GFF594 0.74 +0.8

Or see this region's nucleotide sequence