Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4038 and GFF4039 are separated by 1 nucleotides GFF4039 and GFF5790 are separated by 110 nucleotides GFF5790 and GFF4040 are separated by 76 nucleotides
GFF4038 - TRAP-type uncharacterized transport system, fused permease component, at 956,086 to 958,668
GFF4038
GFF4039 - Asp/Glu racemase, at 958,670 to 959,317
GFF4039
GFF5790 - tRNA-Leu-TAG, at 959,428 to 959,511
GFF5790
GFF4040 - Cell division trigger factor (EC 5.2.1.8), at 959,588 to 960,898
GFF4040
Position (kb) 959
960 Strain fitness (log2 ratio) -1
0
1 at 958.582 kb on + strand at 958.583 kb on - strand at 958.853 kb on + strand, within GFF4039 at 958.854 kb on - strand, within GFF4039 at 958.854 kb on - strand, within GFF4039 at 958.854 kb on - strand, within GFF4039 at 959.348 kb on - strand at 959.395 kb on + strand at 959.421 kb on - strand at 959.462 kb on + strand, within GFF5790 at 959.463 kb on - strand, within GFF5790 at 959.574 kb on + strand at 959.574 kb on + strand at 959.574 kb on + strand at 959.574 kb on + strand at 959.574 kb on + strand at 959.575 kb on - strand at 959.575 kb on - strand at 959.766 kb on - strand, within GFF4040 at 959.777 kb on + strand, within GFF4040 at 959.777 kb on + strand, within GFF4040 at 959.777 kb on + strand, within GFF4040 at 959.777 kb on + strand, within GFF4040 at 959.777 kb on + strand, within GFF4040 at 959.777 kb on + strand, within GFF4040 at 959.778 kb on - strand, within GFF4040 at 959.921 kb on + strand, within GFF4040 at 959.921 kb on + strand, within GFF4040 at 959.921 kb on + strand, within GFF4040 at 959.922 kb on - strand, within GFF4040 at 959.922 kb on - strand, within GFF4040 at 959.922 kb on - strand, within GFF4040 at 959.922 kb on - strand, within GFF4040 at 960.254 kb on + strand, within GFF4040 at 960.255 kb on - strand, within GFF4040 at 960.255 kb on - strand, within GFF4040
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 958,582 + -0.4 958,583 - +0.1 958,853 + GFF4039 0.28 +1.3 958,854 - GFF4039 0.28 +0.7 958,854 - GFF4039 0.28 -0.1 958,854 - GFF4039 0.28 -0.2 959,348 - -0.2 959,395 + -0.9 959,421 - -0.5 959,462 + GFF5790 0.40 -1.2 959,463 - GFF5790 0.42 +0.1 959,574 + -1.0 959,574 + +0.2 959,574 + +0.0 959,574 + -0.7 959,574 + -0.3 959,575 - -1.7 959,575 - -0.5 959,766 - GFF4040 0.14 +0.3 959,777 + GFF4040 0.14 -0.5 959,777 + GFF4040 0.14 +0.5 959,777 + GFF4040 0.14 -0.5 959,777 + GFF4040 0.14 -0.4 959,777 + GFF4040 0.14 -0.3 959,777 + GFF4040 0.14 -0.5 959,778 - GFF4040 0.14 -0.4 959,921 + GFF4040 0.25 -0.0 959,921 + GFF4040 0.25 -0.9 959,921 + GFF4040 0.25 +1.1 959,922 - GFF4040 0.25 +1.2 959,922 - GFF4040 0.25 +0.2 959,922 - GFF4040 0.25 -0.3 959,922 - GFF4040 0.25 -0.2 960,254 + GFF4040 0.51 -0.3 960,255 - GFF4040 0.51 -1.1 960,255 - GFF4040 0.51 +0.2
Or see this region's nucleotide sequence