Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5781

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,809,552	+		GFF5780	0.84	-0.3
2,809,552	+		GFF5780	0.84	+0.4
2,809,573	+		GFF5780	0.87	+0.2
2,809,727	+				-0.2
2,809,727	+				-0.8
2,809,727	+				+0.2
2,809,727	+				-0.2
2,809,728	-				+0.2
2,809,728	-				+0.4
2,809,728	-				-0.2
2,809,728	-				+0.3
2,809,896	-				+0.6
2,809,917	+				-0.4
2,810,222	+		GFF5781	0.28	+0.6
2,810,222	+		GFF5781	0.28	-0.1
2,810,223	-		GFF5781	0.28	+1.2
2,810,223	-		GFF5781	0.28	+0.7
2,810,223	-		GFF5781	0.28	+0.1
2,810,223	-		GFF5781	0.28	+1.6
2,810,224	-		GFF5781	0.29	-0.1
2,810,293	-		GFF5781	0.68	+0.5
2,810,379	+				+1.7
2,810,380	-				+0.5
2,810,380	-				+0.4
2,810,380	-				+0.5
2,810,380	-				-0.3
2,810,586	+		GFF5782	0.23	+0.3
2,810,587	-		GFF5782	0.24	-0.9
2,810,587	-		GFF5782	0.24	+2.2
2,810,645	+		GFF5782	0.32	+0.9
2,810,667	-		GFF5782	0.36	-0.7
2,810,667	-		GFF5782	0.36	+0.1
2,810,744	+		GFF5782	0.47	+0.1
2,810,744	+		GFF5782	0.47	-0.9
2,810,745	-		GFF5782	0.47	+0.4
2,810,843	+		GFF5782	0.62	-0.4
2,810,844	-		GFF5782	0.62	+0.7
2,810,844	-		GFF5782	0.62	+0.6
2,810,844	-		GFF5782	0.62	+0.3
2,810,909	+		GFF5782	0.72	-0.3
2,810,909	+		GFF5782	0.72	+0.1
2,810,910	-		GFF5782	0.72	-0.7
2,810,910	-		GFF5782	0.72	-0.0
2,810,910	-		GFF5782	0.72	+0.5
2,811,172	+				-1.0
2,811,173	-				+1.1
2,811,278	-				-1.6
2,811,332	-				-0.1