Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5754

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,779,281	+				+0.5
2,779,281	+				-0.4
2,779,524	-				+0.6
2,779,524	-				-1.6
2,779,524	-				-0.1
2,779,637	+		GFF5754	0.19	-0.4
2,779,638	-		GFF5754	0.19	-0.5
2,779,779	-		GFF5754	0.31	+0.1
2,779,911	-		GFF5754	0.42	-0.4
2,779,922	+		GFF5754	0.43	-0.4
2,780,105	+		GFF5754	0.59	+0.3
2,780,106	-		GFF5754	0.59	-0.6
2,780,247	-		GFF5754	0.71	-0.1
2,780,247	-		GFF5754	0.71	-1.5
2,780,247	-		GFF5754	0.71	+0.3
2,780,448	-		GFF5754	0.88	-0.6
2,781,085	+		GFF5755	0.48	-0.2