Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5734

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,762,409	+		GFF5732	0.59	-0.1
2,762,517	+		GFF5732	0.68	+0.7
2,762,517	+		GFF5732	0.68	-0.3
2,762,517	+		GFF5732	0.68	-2.7
2,762,518	-		GFF5732	0.68	-0.5
2,762,766	+		GFF5732	0.87	-0.1
2,762,767	-		GFF5732	0.87	-3.1
2,762,820	+				-1.7
2,762,820	+				-0.0
2,762,859	+				+1.0
2,762,859	+				+0.1
2,762,871	+				+0.3
2,762,871	+				-0.3
2,762,871	+				-1.3
2,762,871	+				+0.7
2,762,871	+				-1.0
2,762,871	+				-0.8
2,762,871	+				+0.7
2,762,872	-				-1.9
2,762,872	-				-0.4
2,762,874	+				-0.6
2,762,874	+				-0.4
2,763,899	+		GFF5734	0.68	-2.5
2,764,037	+		GFF5734	0.83	-1.7
2,764,154	+				-2.3
2,764,155	-				-1.1
2,764,193	+				+0.1
2,764,194	-				-0.9
2,764,196	+				+0.7
2,764,196	+				-1.2
2,764,197	-				-0.0
2,764,604	+		GFF5735	0.44	-1.3
2,764,604	+		GFF5735	0.44	-2.1
2,764,604	+		GFF5735	0.44	-0.3
2,764,605	-		GFF5735	0.44	-2.8
2,764,605	-		GFF5735	0.44	-2.2
2,764,605	-		GFF5735	0.44	-0.7
2,764,605	-		GFF5735	0.44	+0.4
2,764,619	+		GFF5735	0.45	-2.2
2,764,620	-		GFF5735	0.45	-1.0
2,764,620	-		GFF5735	0.45	-0.0
2,764,620	-		GFF5735	0.45	-0.9
2,764,875	+		GFF5735	0.72	-1.5
2,764,877	+		GFF5735	0.73	-0.6
2,764,877	+		GFF5735	0.73	-2.1
2,764,877	+		GFF5735	0.73	-0.2
2,764,878	-		GFF5735	0.73	-1.5
2,764,878	-		GFF5735	0.73	+0.1
2,764,878	-		GFF5735	0.73	-1.4
2,764,878	-		GFF5735	0.73	-0.9
2,764,878	-		GFF5735	0.73	-0.9
2,764,878	-		GFF5735	0.73	+0.4
2,764,937	+		GFF5735	0.79	-2.1
2,764,937	+		GFF5735	0.79	-1.6
2,764,937	+		GFF5735	0.79	-1.0
2,764,937	+		GFF5735	0.79	-1.4
2,764,937	+		GFF5735	0.79	-0.8
2,764,937	+		GFF5735	0.79	-1.1
2,764,938	-		GFF5735	0.79	-0.4
2,764,938	-		GFF5735	0.79	+0.4
2,765,144	+				+0.2
2,765,144	+				-1.9
2,765,145	-				-1.1
2,765,145	-				-0.4
2,765,145	-				-0.9
2,765,145	-				-0.2
2,765,196	+				+1.0
2,765,197	-				+0.2