Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5677

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,698,028	+		GFF5676	0.19	+0.9
2,698,029	-		GFF5676	0.19	+0.7
2,698,041	-		GFF5676	0.21	+0.3
2,698,067	+		GFF5676	0.24	+0.7
2,698,274	+		GFF5676	0.52	-0.1
2,698,523	+		GFF5676	0.84	+0.2
2,698,524	-		GFF5676	0.84	+1.4
2,698,623	-				-0.3
2,698,662	-				+0.3
2,698,728	+				+0.2
2,698,728	+				+0.4
2,698,729	-				-0.0
2,698,900	-		GFF5677	0.14	-0.2
2,699,245	-		GFF5677	0.42	-0.7
2,699,307	+		GFF5677	0.47	+1.1
2,699,577	+		GFF5677	0.69	-0.0
2,699,578	-		GFF5677	0.69	-0.3
2,699,700	+		GFF5677	0.79	-0.3
2,699,701	-		GFF5677	0.79	-0.1
2,700,154	+		GFF5678	0.34	+0.4
2,700,178	+		GFF5678	0.38	+0.3
2,700,184	+		GFF5678	0.39	-0.3
2,700,184	+		GFF5678	0.39	-1.8
2,700,185	-		GFF5678	0.39	+0.2
2,700,185	-		GFF5678	0.39	-0.4
2,700,185	-		GFF5678	0.39	+0.7
2,700,246	+		GFF5678	0.50	-2.0
2,700,295	+		GFF5678	0.58	-0.9
2,700,342	+		GFF5678	0.66	-0.9
2,700,342	+		GFF5678	0.66	+0.5
2,700,608	+				-1.6
2,700,613	-				+0.6
2,700,613	-				+0.8
2,700,664	+				+0.4
2,700,910	+		GFF5679	0.19	+0.6
2,700,910	+		GFF5679	0.19	+0.2
2,700,910	+		GFF5679	0.19	+0.2
2,700,911	-		GFF5679	0.19	+0.9