Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5475

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,476,817	-		GFF5474	0.32	-0.8
2,477,014	+		GFF5474	0.50	+0.5
2,477,014	+		GFF5474	0.50	+0.8
2,477,015	-		GFF5474	0.50	-0.1
2,477,015	-		GFF5474	0.50	-0.3
2,477,015	-		GFF5474	0.50	+0.6
2,477,015	-		GFF5474	0.50	-0.5
2,477,218	+		GFF5474	0.68	+0.4
2,477,219	-		GFF5474	0.68	+0.4
2,477,236	+		GFF5474	0.70	+0.1
2,477,236	+		GFF5474	0.70	-0.3
2,477,237	-		GFF5474	0.70	-0.7
2,477,237	-		GFF5474	0.70	-0.3
2,477,320	+		GFF5474	0.78	-2.1
2,477,320	+		GFF5474	0.78	-0.1
2,477,320	+		GFF5474	0.78	+0.1
2,477,320	+		GFF5474	0.78	+1.6
2,477,404	+		GFF5474	0.85	+0.9
2,477,404	+		GFF5474	0.85	-0.5
2,477,404	+		GFF5474	0.85	-0.7
2,477,404	+		GFF5474	0.85	+0.0
2,477,404	+		GFF5474	0.85	+1.0
2,477,405	-		GFF5474	0.85	+0.2
2,477,405	-		GFF5474	0.85	-1.1
2,477,405	-		GFF5474	0.85	-0.2
2,477,524	-				-0.8
2,477,578	+				+0.8
2,477,578	+				-0.1
2,477,579	-				-0.1
2,477,579	-				+0.0
2,478,264	-				+2.2
2,478,525	-		GFF5476	0.26	+2.3
2,478,552	-		GFF5476	0.28	+0.4