Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5449

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,450,434	+		GFF5448	0.13	+0.3
2,450,566	+		GFF5448	0.27	+0.0
2,450,567	-		GFF5448	0.27	+0.3
2,451,333	+				+0.1
2,451,351	-				+0.1
2,451,437	+				-1.1
2,451,437	+				+1.5
2,451,437	+				-0.2
2,452,031	+		GFF5449	0.48	-0.3
2,452,031	+		GFF5449	0.48	-1.4
2,452,605	-		GFF5449	0.89	+0.2
2,452,652	+				-0.1
2,452,652	+				-0.1
2,452,652	+				-0.3
2,452,652	+				+0.6
2,452,872	+				+0.2
2,452,872	+				-0.4
2,452,872	+				-0.2
2,452,873	-				-0.4
2,453,004	+				+0.4
2,453,051	-				+0.9
2,453,051	-				+0.1
2,453,125	-				-0.9
2,453,132	+				+0.6
2,453,132	+				-0.3
2,453,132	+				+0.3
2,453,132	+				-0.5
2,453,132	+				+0.2
2,453,132	+				-0.0
2,453,132	+				+0.2
2,453,133	-				-1.2
2,453,133	-				-0.3
2,453,133	-				-1.3
2,453,133	-				-0.6
2,453,135	+				+1.5
2,453,135	+				+0.5
2,453,136	-				-1.0
2,453,209	+				+0.5
2,453,209	+				+1.5
2,453,209	+				+0.1
2,453,209	+				+0.8
2,453,210	-				+0.1
2,453,284	+				+0.4
2,453,284	+				+0.4
2,453,284	+				-0.0
2,453,285	-				-0.4
2,453,319	+				-0.5
2,453,320	-				-0.8
2,453,320	-				-1.0
2,453,359	+				-0.5
2,453,359	+				+1.9
2,453,359	+				+1.5
2,453,359	+				+0.2
2,453,360	-				+0.9
2,453,398	+				+0.2
2,453,398	+				+0.1
2,453,398	+				+0.4
2,453,398	+				-0.2
2,453,399	-				+0.3
2,453,683	+		GFF5450	0.14	+0.3