Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5428

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,430,807	+		GFF5427	0.67	+0.0
2,430,929	+		GFF5427	0.77	-0.1
2,431,019	-		GFF5427	0.84	+0.4
2,431,019	-		GFF5427	0.84	+0.8
2,431,148	+				-0.4
2,431,553	-		GFF5428	0.28	+1.1
2,431,553	-		GFF5428	0.28	+0.9
2,431,993	+		GFF5428	0.66	+0.2
2,431,993	+		GFF5428	0.66	+0.6
2,431,993	+		GFF5428	0.66	+0.7
2,432,254	+		GFF5428	0.89	+0.0
2,432,254	+		GFF5428	0.89	+0.4
2,432,254	+		GFF5428	0.89	+0.3
2,432,296	+				-0.6
2,432,296	+				+0.8
2,432,534	+		GFF5429	0.15	+0.4
2,432,534	+		GFF5429	0.15	-0.5
2,432,861	+		GFF5429	0.50	+0.2
2,433,077	+		GFF5429	0.73	-0.9
2,433,078	-		GFF5429	0.73	-0.9
2,433,078	-		GFF5429	0.73	+0.3
2,433,078	-		GFF5429	0.73	+0.2