Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5048

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,059,179	+		GFF5046	0.89	+0.3
2,059,179	+		GFF5046	0.89	+1.2
2,059,179	+		GFF5046	0.89	-0.8
2,059,180	-		GFF5046	0.89	+0.1
2,059,613	+		GFF5047	0.46	-1.5
2,059,613	+		GFF5047	0.46	+1.2
2,059,613	+		GFF5047	0.46	+0.4
2,059,613	+		GFF5047	0.46	-1.4
2,059,614	-		GFF5047	0.46	+0.0
2,059,614	-		GFF5047	0.46	+0.1
2,059,614	-		GFF5047	0.46	+0.9
2,059,614	-		GFF5047	0.46	-0.4
2,059,614	-		GFF5047	0.46	+0.9
2,059,662	-		GFF5047	0.52	+0.3
2,059,719	-		GFF5047	0.59	+0.6
2,059,829	+		GFF5047	0.73	+0.5
2,059,829	+		GFF5047	0.73	-0.4
2,059,829	+		GFF5047	0.73	-0.1
2,059,965	-		GFF5047	0.90	-0.1
2,060,000	+				-1.3
2,060,311	-		GFF5048	0.16	-1.6
2,060,311	-		GFF5048	0.16	-0.2
2,060,311	-		GFF5048	0.16	+0.6
2,060,762	+		GFF5048	0.43	-0.3
2,060,762	+		GFF5048	0.43	-0.5
2,060,763	-		GFF5048	0.43	+0.2
2,060,763	-		GFF5048	0.43	+0.3
2,060,829	-		GFF5048	0.47	-1.9
2,060,829	-		GFF5048	0.47	-0.1
2,061,071	-		GFF5048	0.61	-1.3
2,061,246	+		GFF5048	0.72	-0.0
2,061,639	+				-0.2
2,061,639	+				-0.1
2,061,639	+				-0.7
2,061,719	+				+1.3
2,061,719	+				+0.1
2,061,719	+				+0.5
2,061,720	-				+1.1
2,061,899	+		GFF5049	0.12	-1.7
2,061,900	-		GFF5049	0.12	+1.1
2,062,097	+		GFF5049	0.25	-0.1
2,062,098	-		GFF5049	0.25	-0.4
2,062,250	+		GFF5049	0.35	-0.7
2,062,251	-		GFF5049	0.35	+0.0
2,062,251	-		GFF5049	0.35	-0.0
2,062,251	-		GFF5049	0.35	+1.1
2,062,251	-		GFF5049	0.35	-0.4
2,062,364	+		GFF5049	0.43	+0.1