Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4942 and GFF4943 are separated by 7 nucleotides GFF4943 and GFF4944 are separated by 182 nucleotides GFF4944 and GFF4945 are separated by 119 nucleotides
GFF4942 - Tricarboxylate transport protein TctC, at 1,961,206 to 1,962,186
GFF4942
GFF4943 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 1,962,194 to 1,962,595
GFF4943
GFF4944 - transcriptional regulator, TetR family, at 1,962,778 to 1,963,368
GFF4944
GFF4945 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 1,963,488 to 1,964,504
GFF4945
Position (kb) 1962
1963
1964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1962.064 kb on + strand, within GFF4942 at 1962.065 kb on - strand, within GFF4942 at 1962.643 kb on - strand at 1962.914 kb on - strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.916 kb on + strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.917 kb on - strand, within GFF4944 at 1962.940 kb on + strand, within GFF4944 at 1962.940 kb on + strand, within GFF4944 at 1962.940 kb on + strand, within GFF4944 at 1962.941 kb on - strand, within GFF4944 at 1962.941 kb on - strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.030 kb on + strand, within GFF4944 at 1963.031 kb on - strand, within GFF4944 at 1963.031 kb on - strand, within GFF4944 at 1963.031 kb on - strand, within GFF4944 at 1963.426 kb on - strand at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.614 kb on + strand, within GFF4945 at 1963.680 kb on + strand, within GFF4945 at 1963.680 kb on + strand, within GFF4945 at 1963.681 kb on - strand, within GFF4945 at 1963.681 kb on - strand, within GFF4945 at 1963.708 kb on - strand, within GFF4945 at 1963.746 kb on + strand, within GFF4945 at 1964.121 kb on + strand, within GFF4945 at 1964.121 kb on + strand, within GFF4945 at 1964.121 kb on + strand, within GFF4945 at 1964.203 kb on - strand, within GFF4945 at 1964.203 kb on - strand, within GFF4945 at 1964.203 kb on - strand, within GFF4945
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 1,962,064 + GFF4942 0.87 +0.0 1,962,065 - GFF4942 0.88 +0.4 1,962,643 - +2.0 1,962,914 - GFF4944 0.23 -2.3 1,962,916 + GFF4944 0.23 -2.8 1,962,916 + GFF4944 0.23 -1.3 1,962,916 + GFF4944 0.23 -1.9 1,962,916 + GFF4944 0.23 -1.2 1,962,916 + GFF4944 0.23 -1.8 1,962,917 - GFF4944 0.24 -2.2 1,962,917 - GFF4944 0.24 -1.6 1,962,917 - GFF4944 0.24 -0.8 1,962,917 - GFF4944 0.24 -1.8 1,962,917 - GFF4944 0.24 -0.8 1,962,917 - GFF4944 0.24 -3.9 1,962,940 + GFF4944 0.27 -0.1 1,962,940 + GFF4944 0.27 -2.3 1,962,940 + GFF4944 0.27 -1.6 1,962,941 - GFF4944 0.28 -2.7 1,962,941 - GFF4944 0.28 -2.6 1,963,030 + GFF4944 0.43 -1.0 1,963,030 + GFF4944 0.43 -3.1 1,963,030 + GFF4944 0.43 -2.6 1,963,030 + GFF4944 0.43 -2.6 1,963,030 + GFF4944 0.43 -1.4 1,963,030 + GFF4944 0.43 -1.5 1,963,030 + GFF4944 0.43 -1.0 1,963,031 - GFF4944 0.43 -0.8 1,963,031 - GFF4944 0.43 -3.2 1,963,031 - GFF4944 0.43 -0.8 1,963,426 - -0.1 1,963,614 + GFF4945 0.12 +0.0 1,963,614 + GFF4945 0.12 +0.0 1,963,614 + GFF4945 0.12 -0.2 1,963,614 + GFF4945 0.12 +0.1 1,963,614 + GFF4945 0.12 +0.5 1,963,614 + GFF4945 0.12 -0.0 1,963,680 + GFF4945 0.19 -0.4 1,963,680 + GFF4945 0.19 -0.5 1,963,681 - GFF4945 0.19 -0.6 1,963,681 - GFF4945 0.19 -1.6 1,963,708 - GFF4945 0.22 -0.2 1,963,746 + GFF4945 0.25 -0.1 1,964,121 + GFF4945 0.62 +0.0 1,964,121 + GFF4945 0.62 -0.3 1,964,121 + GFF4945 0.62 -1.0 1,964,203 - GFF4945 0.70 -0.5 1,964,203 - GFF4945 0.70 +0.1 1,964,203 - GFF4945 0.70 +1.1
Or see this region's nucleotide sequence