Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4830

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,841,260	+		GFF4828	0.70	-0.7
1,841,260	+		GFF4828	0.70	+0.2
1,841,261	-		GFF4828	0.70	+0.6
1,841,261	-		GFF4828	0.70	+0.4
1,841,261	-		GFF4828	0.70	-1.1
1,841,261	-		GFF4828	0.70	-0.1
1,841,261	-		GFF4828	0.70	-0.3
1,841,818	-		GFF4829	0.14	+0.0
1,842,188	-				+0.4
1,842,266	+				+0.8
1,842,266	+				-0.6
1,842,266	+				-0.3
1,842,266	+				-0.6
1,842,267	-				+1.7
1,842,338	+		GFF4830	0.14	+1.8
1,842,408	-		GFF4830	0.21	+0.7
1,842,728	+		GFF4830	0.56	+0.0
1,843,046	+				-0.4
1,843,047	-				+0.2
1,843,095	-				-0.7
1,843,379	+		GFF4831	0.34	-1.1
1,843,379	+		GFF4831	0.34	+0.6
1,843,379	+		GFF4831	0.34	-0.5
1,843,379	+		GFF4831	0.34	+1.5
1,843,380	-		GFF4831	0.34	+0.2
1,843,380	-		GFF4831	0.34	+0.3
1,843,380	-		GFF4831	0.34	+0.3
1,843,430	+		GFF4831	0.45	+0.9
1,843,431	-		GFF4831	0.45	+0.2
1,843,431	-		GFF4831	0.45	-0.5
1,843,738	+				-0.5
1,843,807	+		GFF4832	0.14	-0.3
1,843,894	+		GFF4832	0.24	+0.8
1,844,137	+		GFF4832	0.52	-0.2
1,844,137	+		GFF4832	0.52	-0.1
1,844,137	+		GFF4832	0.52	-0.2
1,844,137	+		GFF4832	0.52	-0.3
1,844,137	+		GFF4832	0.52	-0.4
1,844,137	+		GFF4832	0.52	+0.9
1,844,137	+		GFF4832	0.52	-0.1
1,844,137	+		GFF4832	0.52	+0.8
1,844,138	-		GFF4832	0.52	-0.6
1,844,138	-		GFF4832	0.52	-0.4
1,844,138	-		GFF4832	0.52	-1.1
1,844,138	-		GFF4832	0.52	+0.6