Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4809

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,820,714	+		GFF4808	0.12	-0.1
1,820,714	+		GFF4808	0.12	+0.3
1,820,715	-		GFF4808	0.12	+0.4
1,820,715	-		GFF4808	0.12	-0.2
1,820,715	-		GFF4808	0.12	+0.0
1,820,715	-		GFF4808	0.12	+0.9
1,820,715	-		GFF4808	0.12	-0.1
1,820,715	-		GFF4808	0.12	-0.5
1,820,715	-		GFF4808	0.12	-1.9
1,820,787	-		GFF4808	0.19	+0.5
1,820,966	+		GFF4808	0.36	-0.6
1,820,966	+		GFF4808	0.36	-0.1
1,820,966	+		GFF4808	0.36	-2.0
1,820,966	+		GFF4808	0.36	-0.1
1,820,993	+		GFF4808	0.39	+0.2
1,820,994	-		GFF4808	0.39	-0.1
1,820,994	-		GFF4808	0.39	-0.2
1,821,134	+		GFF4808	0.52	+0.8
1,821,135	-		GFF4808	0.53	-0.5
1,821,299	+		GFF4808	0.68	-0.9
1,821,299	+		GFF4808	0.68	+0.1
1,821,300	-		GFF4808	0.68	-0.8
1,821,300	-		GFF4808	0.68	+0.2
1,821,313	-		GFF4808	0.70	-0.7
1,821,338	+		GFF4808	0.72	-0.9
1,821,338	+		GFF4808	0.72	+0.1
1,821,338	+		GFF4808	0.72	+0.5
1,821,476	+		GFF4808	0.85	-0.4
1,821,476	+		GFF4808	0.85	-1.0
1,821,476	+		GFF4808	0.85	-0.6
1,821,476	+		GFF4808	0.85	+1.5
1,821,476	+		GFF4808	0.85	-2.3
1,821,476	+		GFF4808	0.85	+0.8
1,821,476	+		GFF4808	0.85	+0.7
1,821,477	-		GFF4808	0.85	-0.8
1,821,477	-		GFF4808	0.85	-0.1
1,821,477	-		GFF4808	0.85	-2.9
1,821,477	-		GFF4808	0.85	+0.4
1,821,477	-		GFF4808	0.85	+0.1
1,821,477	-		GFF4808	0.85	+0.7
1,821,673	-				+0.5
1,821,828	+		GFF4809	0.21	+0.6
1,821,828	+		GFF4809	0.21	+1.5
1,821,829	-		GFF4809	0.21	+0.7
1,821,885	+		GFF4809	0.31	+0.3
1,821,885	+		GFF4809	0.31	+0.7
1,821,885	+		GFF4809	0.31	+0.4
1,821,885	+		GFF4809	0.31	+1.0
1,821,886	-		GFF4809	0.32	+1.0
1,821,886	-		GFF4809	0.32	+0.6
1,821,886	-		GFF4809	0.32	+1.2
1,821,886	-		GFF4809	0.32	+0.6
1,822,077	+		GFF4809	0.66	+1.2
1,822,077	+		GFF4809	0.66	+1.5
1,822,077	+		GFF4809	0.66	+0.7
1,822,077	+		GFF4809	0.66	+0.5
1,822,077	+		GFF4809	0.66	+0.4
1,822,078	-		GFF4809	0.66	+0.6
1,822,078	-		GFF4809	0.66	+0.3
1,822,080	+		GFF4809	0.66	+0.5
1,822,209	+		GFF4809	0.90	-0.2
1,822,209	+		GFF4809	0.90	+1.5
1,822,209	+		GFF4809	0.90	+0.7
1,822,210	-				+0.8
1,822,210	-				+0.6
1,822,210	-				+0.4
1,822,210	-				+0.6
1,822,488	-		GFF4810	0.67	+1.0
1,822,544	+		GFF4810	0.85	+0.2
1,822,544	+		GFF4810	0.85	+0.4
1,822,544	+		GFF4810	0.85	-2.0
1,822,545	-		GFF4810	0.85	+0.5
1,822,545	-		GFF4810	0.85	-0.6
1,822,545	-		GFF4810	0.85	+0.0
1,822,572	-				+0.2
1,822,603	+				-0.4
1,822,603	+				-0.4
1,822,603	+				-0.1
1,822,766	+		GFF4811	0.25	+0.2
1,822,766	+		GFF4811	0.25	-0.2
1,822,766	+		GFF4811	0.25	+0.0
1,822,767	-		GFF4811	0.25	-0.6
1,822,767	-		GFF4811	0.25	-0.0
1,823,225	+				-0.6
1,823,225	+				+0.8
1,823,225	+				+0.1
1,823,225	+				+0.1
1,823,225	+				+0.1
1,823,226	-				-0.7