Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4790

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,800,954	+				-4.0
1,800,954	+				-3.9
1,800,955	-				-3.4
1,800,955	-				-0.6
1,801,144	-				+0.1
1,801,166	+				-0.2
1,801,166	+				+1.2
1,801,174	+				+0.1
1,801,175	-				+0.2
1,801,175	-				+0.3
1,801,348	+		GFF4789	0.26	+1.3
1,801,348	+		GFF4789	0.26	-0.2
1,801,436	-		GFF4789	0.39	-0.7
1,801,436	-		GFF4789	0.39	-1.8
1,801,436	-		GFF4789	0.39	-0.9
1,801,879	+				+0.1
1,801,977	-				+0.3
1,802,316	-		GFF4790	0.45	+0.4
1,802,654	+		GFF4790	0.83	+0.0
1,802,654	+		GFF4790	0.83	+1.2
1,802,654	+		GFF4790	0.83	-1.1
1,802,654	+		GFF4790	0.83	-1.2
1,802,655	-		GFF4790	0.84	+0.3
1,802,742	-				-0.3
1,802,742	-				+2.0
1,802,742	-				+0.4
1,803,000	+		GFF4791	0.21	+0.1
1,803,000	+		GFF4791	0.21	+0.5
1,803,000	+		GFF4791	0.21	-1.7
1,803,000	+		GFF4791	0.21	+0.9
1,803,000	+		GFF4791	0.21	-0.2
1,803,000	+		GFF4791	0.21	+0.8
1,803,099	+		GFF4791	0.31	+0.1
1,803,100	-		GFF4791	0.31	-0.3
1,803,231	+		GFF4791	0.45	-0.3
1,803,360	+		GFF4791	0.58	-0.0
1,803,360	+		GFF4791	0.58	-0.1
1,803,360	+		GFF4791	0.58	+0.7
1,803,360	+		GFF4791	0.58	-0.6
1,803,361	-		GFF4791	0.58	+0.0
1,803,361	-		GFF4791	0.58	+0.0
1,803,690	+				+0.8
1,803,690	+				-0.9
1,803,690	+				+0.1
1,803,690	+				-0.0
1,803,690	+				+1.1
1,803,690	-				+0.4
1,803,691	-				-0.4
1,803,727	-				+0.2