Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4788

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,799,004	+				-2.6
1,799,005	-				-3.6
1,799,005	-				-0.1
1,799,005	-				-1.9
1,799,028	+				-5.3
1,799,028	+				-1.1
1,799,029	-				-4.7
1,799,029	-				-1.4
1,799,040	+				-2.2
1,799,040	+				-3.8
1,799,397	+		GFF4788	0.21	-2.9
1,799,397	+		GFF4788	0.21	-1.6
1,799,398	-		GFF4788	0.21	-2.3
1,799,398	-		GFF4788	0.21	-3.4
1,799,409	+		GFF4788	0.22	-3.5
1,799,409	+		GFF4788	0.22	-2.1
1,799,410	-		GFF4788	0.22	-4.4
1,799,410	-		GFF4788	0.22	-4.4
1,799,451	+		GFF4788	0.24	-1.9
1,799,451	+		GFF4788	0.24	-2.5
1,799,694	+		GFF4788	0.35	-0.9
1,799,695	-		GFF4788	0.35	-4.1
1,799,695	-		GFF4788	0.35	-2.2
1,799,695	-		GFF4788	0.35	-1.9
1,799,883	+		GFF4788	0.43	-2.9
1,799,883	+		GFF4788	0.43	-3.7
1,799,883	+		GFF4788	0.43	-1.5
1,799,883	+		GFF4788	0.43	-3.0
1,799,883	+		GFF4788	0.43	-0.9
1,799,883	+		GFF4788	0.43	-3.8
1,799,883	+		GFF4788	0.43	-4.6
1,799,883	+		GFF4788	0.43	-3.3
1,799,884	-		GFF4788	0.43	-3.1
1,799,884	-		GFF4788	0.43	-4.5
1,799,884	-		GFF4788	0.43	-2.2
1,800,078	+		GFF4788	0.52	-3.8
1,800,079	-		GFF4788	0.52	-1.7
1,800,079	-		GFF4788	0.52	-2.3
1,800,079	-		GFF4788	0.52	-1.4
1,800,079	-		GFF4788	0.52	-4.2
1,800,220	-		GFF4788	0.59	-0.6
1,800,220	-		GFF4788	0.59	-3.3
1,800,306	+		GFF4788	0.63	-3.3
1,800,306	+		GFF4788	0.63	-2.9
1,800,306	+		GFF4788	0.63	-4.3
1,800,306	+		GFF4788	0.63	-2.4
1,800,306	+		GFF4788	0.63	-1.1
1,800,423	+		GFF4788	0.68	-2.7
1,800,423	+		GFF4788	0.68	-3.7
1,800,424	-		GFF4788	0.68	-3.4
1,800,424	-		GFF4788	0.68	-1.1
1,800,424	-		GFF4788	0.68	-4.2
1,800,474	+		GFF4788	0.71	-1.5
1,800,474	+		GFF4788	0.71	-2.3
1,800,474	+		GFF4788	0.71	-3.1
1,800,474	+		GFF4788	0.71	-3.4
1,800,474	+		GFF4788	0.71	-4.0
1,800,474	+		GFF4788	0.71	-1.8
1,800,474	+		GFF4788	0.71	-1.5
1,800,474	+		GFF4788	0.71	-2.4
1,800,474	+		GFF4788	0.71	-1.9
1,800,474	+		GFF4788	0.71	-1.4
1,800,474	+		GFF4788	0.71	-3.2
1,800,475	-		GFF4788	0.71	-1.9
1,800,475	-		GFF4788	0.71	-3.1
1,800,475	-		GFF4788	0.71	-3.7
1,800,475	-		GFF4788	0.71	-3.8
1,800,475	-		GFF4788	0.71	-3.2
1,800,475	-		GFF4788	0.71	-4.1
1,800,475	-		GFF4788	0.71	-4.4
1,800,475	-		GFF4788	0.71	-3.2
1,800,571	-		GFF4788	0.75	-0.9
1,800,729	+		GFF4788	0.82	-3.9
1,800,730	-		GFF4788	0.82	-2.6
1,800,798	+		GFF4788	0.85	-4.3
1,800,867	+		GFF4788	0.89	-2.7
1,800,867	+		GFF4788	0.89	-1.5
1,800,868	-		GFF4788	0.89	-2.4
1,800,868	-		GFF4788	0.89	-4.4
1,800,868	-		GFF4788	0.89	-2.8
1,800,954	+				-4.0
1,800,954	+				-3.9
1,800,955	-				-3.4
1,800,955	-				-0.6
1,801,144	-				+0.1
1,801,166	+				-0.2
1,801,166	+				+1.2
1,801,174	+				+0.1
1,801,175	-				+0.2
1,801,175	-				+0.3
1,801,348	+		GFF4789	0.26	+1.3
1,801,348	+		GFF4789	0.26	-0.2
1,801,436	-		GFF4789	0.39	-0.7
1,801,436	-		GFF4789	0.39	-1.8
1,801,436	-		GFF4789	0.39	-0.9
1,801,879	+				+0.1
1,801,977	-				+0.3