Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4769

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,777,877	+		GFF4768	0.36	+0.1
1,777,878	-		GFF4768	0.36	+1.1
1,777,878	-		GFF4768	0.36	+0.5
1,777,878	-		GFF4768	0.36	-0.5
1,777,878	-		GFF4768	0.36	+0.3
1,778,237	+		GFF4768	0.65	+0.3
1,778,237	+		GFF4768	0.65	+0.5
1,778,312	+		GFF4768	0.71	+0.8
1,778,312	+		GFF4768	0.71	+1.1
1,778,405	+		GFF4768	0.78	+0.7
1,778,408	+		GFF4768	0.78	+0.4
1,778,409	-		GFF4768	0.79	+0.2
1,778,409	-		GFF4768	0.79	+0.4
1,778,603	+				+0.9
1,778,603	+				+0.2
1,778,604	-				+1.4
1,778,657	+				+0.2
1,778,657	+				-0.5
1,778,658	-				+1.0
1,778,658	-				+0.3
1,778,658	-				+1.2
1,778,781	+				-0.1
1,778,782	-				+2.5
1,778,826	+		GFF4769	0.12	+0.6
1,778,841	+		GFF4769	0.14	+1.2
1,778,842	-		GFF4769	0.14	+0.6
1,778,842	-		GFF4769	0.14	+0.2
1,778,842	-		GFF4769	0.14	-0.5
1,778,842	-		GFF4769	0.14	+0.9
1,778,842	-		GFF4769	0.14	+2.2
1,778,886	+		GFF4769	0.18	+0.9
1,778,887	-		GFF4769	0.18	+0.2
1,778,887	-		GFF4769	0.18	+1.0
1,778,967	+		GFF4769	0.26	+0.8
1,778,967	+		GFF4769	0.26	+1.0
1,778,968	-		GFF4769	0.26	+0.4
1,779,021	+		GFF4769	0.31	+0.9
1,779,021	+		GFF4769	0.31	+0.7
1,779,022	-		GFF4769	0.31	-2.0
1,779,045	+		GFF4769	0.33	+0.6
1,779,046	-		GFF4769	0.33	+0.2
1,779,190	-		GFF4769	0.47	-0.3
1,779,190	-		GFF4769	0.47	-0.5
1,779,337	-		GFF4769	0.61	+0.8
1,779,481	-		GFF4769	0.75	+0.8
1,779,481	-		GFF4769	0.75	+1.2
1,779,588	+		GFF4769	0.85	+1.8
1,779,588	+		GFF4769	0.85	+0.6
1,779,588	+		GFF4769	0.85	+1.2
1,779,589	-		GFF4769	0.85	+1.3
1,779,589	-		GFF4769	0.85	+0.3
1,779,589	-		GFF4769	0.85	+1.5
1,779,853	+		GFF4770	0.13	-0.9
1,779,854	-		GFF4770	0.13	+0.7
1,779,929	-		GFF4770	0.22	+0.1
1,779,929	-		GFF4770	0.22	+0.4
1,779,929	-		GFF4770	0.22	+0.4
1,779,929	-		GFF4770	0.22	+1.2
1,780,010	-		GFF4770	0.31	+0.1
1,780,010	-		GFF4770	0.31	-0.7
1,780,010	-		GFF4770	0.31	-0.0
1,780,094	-		GFF4770	0.41	+0.6
1,780,123	+		GFF4770	0.44	+0.8
1,780,145	-		GFF4770	0.47	-1.1
1,780,160	-		GFF4770	0.49	+1.0
1,780,525	+				-1.6
1,780,525	+				+1.2
1,780,526	-				+1.7
1,780,552	+				+0.4
1,780,552	+				-0.1
1,780,552	+				+0.9
1,780,553	-				+0.8
1,780,553	-				+1.0