Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4708

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,660,130	+		GFF4707	0.28	-0.2
1,660,131	-		GFF4707	0.28	+0.3
1,660,131	-		GFF4707	0.28	-0.0
1,660,421	+		GFF4707	0.52	-0.4
1,660,421	+		GFF4707	0.52	+0.0
1,660,422	-		GFF4707	0.52	-0.2
1,660,439	+		GFF4707	0.54	-0.1
1,660,440	-		GFF4707	0.54	-1.5
1,660,440	-		GFF4707	0.54	+0.5
1,660,440	-		GFF4707	0.54	-0.5
1,660,607	+		GFF4707	0.68	-0.3
1,660,607	+		GFF4707	0.68	+0.3
1,660,608	-		GFF4707	0.68	-0.8
1,660,608	-		GFF4707	0.68	+0.3
1,660,765	+		GFF4707	0.81	-0.0
1,660,766	-		GFF4707	0.81	+0.6
1,660,766	-		GFF4707	0.81	-0.6
1,661,210	-		GFF4708	0.22	+0.1
1,661,417	-		GFF4708	0.43	+0.5
1,661,417	-		GFF4708	0.43	+0.9
1,661,467	+		GFF4708	0.48	+1.0
1,661,581	+		GFF4708	0.60	+1.1
1,661,581	+		GFF4708	0.60	-0.2
1,661,582	-		GFF4708	0.60	-0.8
1,661,582	-		GFF4708	0.60	-1.7
1,661,984	+				-0.2
1,662,087	-				+0.6
1,662,092	+				-0.1
1,662,093	-				+0.8
1,662,093	-				-0.5
1,662,462	-		GFF4709	0.34	-1.0