Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4671

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,619,979	+		GFF4669	0.72	+0.6
1,619,979	+		GFF4669	0.72	+1.0
1,619,979	+		GFF4669	0.72	+1.6
1,619,980	-		GFF4669	0.72	+1.1
1,619,980	-		GFF4669	0.72	+1.1
1,619,980	-		GFF4669	0.72	+0.6
1,620,189	+				+0.8
1,620,189	+				+0.4
1,620,190	-				+0.4
1,620,248	-				-0.1
1,620,321	+		GFF4670	0.13	+1.0
1,620,322	-		GFF4670	0.13	+1.3
1,620,411	+		GFF4670	0.27	+2.0
1,620,411	+		GFF4670	0.27	+1.8
1,620,412	-		GFF4670	0.27	+0.2
1,620,414	+		GFF4670	0.27	+0.9
1,620,414	+		GFF4670	0.27	+1.0
1,620,414	+		GFF4670	0.27	+1.1
1,620,414	+		GFF4670	0.27	+1.0
1,620,414	+		GFF4670	0.27	+0.9
1,620,414	+		GFF4670	0.27	+1.3
1,620,414	+		GFF4670	0.27	+1.7
1,620,414	+		GFF4670	0.27	+1.0
1,620,415	-		GFF4670	0.27	+1.4
1,620,415	-		GFF4670	0.27	+1.9
1,620,415	-		GFF4670	0.27	+1.4
1,620,415	-		GFF4670	0.27	+1.1
1,620,415	-		GFF4670	0.27	+0.9
1,620,777	+		GFF4670	0.81	-0.4
1,620,777	+		GFF4670	0.81	+0.3
1,620,777	+		GFF4670	0.81	+1.9
1,620,777	+		GFF4670	0.81	+1.1
1,620,778	-		GFF4670	0.81	+1.7
1,620,910	+				+0.2
1,620,910	+				-1.7
1,620,910	+				-1.8
1,620,910	+				+0.5
1,620,911	-				+0.9
1,620,911	-				+0.5
1,620,911	-				+0.5
1,620,911	-				+0.1
1,621,234	+		GFF4671	0.39	+1.7
1,621,234	+		GFF4671	0.39	+1.1
1,621,234	+		GFF4671	0.39	+1.1
1,621,234	+		GFF4671	0.39	+0.6
1,621,234	+		GFF4671	0.39	+1.2
1,621,234	+		GFF4671	0.39	+0.5
1,621,234	+		GFF4671	0.39	+1.2
1,621,235	-		GFF4671	0.40	-0.5
1,621,235	-		GFF4671	0.40	+0.6
1,621,249	+		GFF4671	0.42	-0.2
1,621,249	+		GFF4671	0.42	+0.8
1,621,249	+		GFF4671	0.42	-0.2
1,621,249	+		GFF4671	0.42	+1.4
1,621,393	+		GFF4671	0.62	+0.5
1,621,824	+		GFF4672	0.20	-0.8
1,621,824	+		GFF4672	0.20	-2.3
1,621,824	+		GFF4672	0.20	-0.8
1,621,824	+		GFF4672	0.20	-1.2
1,621,825	-		GFF4672	0.20	+0.3
1,621,825	-		GFF4672	0.20	+0.2
1,621,825	-		GFF4672	0.20	-0.9
1,621,825	-		GFF4672	0.20	-0.5
1,621,825	-		GFF4672	0.20	+0.2
1,621,825	-		GFF4672	0.20	-1.5
1,621,825	-		GFF4672	0.20	+0.4
1,621,825	-		GFF4672	0.20	+0.2
1,621,825	-		GFF4672	0.20	-0.6
1,621,957	-		GFF4672	0.36	-0.7
1,622,047	+		GFF4672	0.47	-0.5
1,622,047	+		GFF4672	0.47	-0.9
1,622,048	-		GFF4672	0.47	+0.4
1,622,048	-		GFF4672	0.47	-1.6
1,622,446	+				-0.3
1,622,447	-				-0.3
1,622,447	-				-0.5
1,622,447	-				+0.2
1,622,447	-				-0.3