Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4520

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,446,071	+		GFF4519	0.68	-0.3
1,446,071	+		GFF4519	0.68	-0.3
1,446,072	-		GFF4519	0.68	+0.0
1,446,072	-		GFF4519	0.68	-0.1
1,446,072	-		GFF4519	0.68	-1.2
1,446,090	-		GFF4519	0.69	+0.1
1,446,090	-		GFF4519	0.69	-0.3
1,446,567	-				+0.1
1,446,567	-				+0.8
1,446,567	-				+0.4
1,446,567	-				+0.1
1,446,724	+				+0.1
1,446,724	+				+0.2
1,446,724	+				-0.7
1,446,725	-				+0.7
1,446,725	-				+1.0
1,446,725	-				-1.4
1,446,725	-				+1.1
1,446,760	+				-2.3
1,446,761	-				-0.6
1,446,761	-				+0.7
1,446,761	-				+0.2
1,447,034	+		GFF4520	0.72	+0.7
1,447,034	+		GFF4520	0.72	+0.0
1,447,034	+		GFF4520	0.72	+1.0
1,447,034	+		GFF4520	0.72	+0.9
1,447,035	-		GFF4520	0.73	+0.7
1,447,130	+				+0.8
1,447,130	+				+0.7
1,447,130	+				+0.8
1,447,131	-				+1.1
1,447,255	+				-0.3
1,447,256	-				+0.4
1,447,256	-				+0.3
1,447,589	+		GFF4521	0.16	+0.7
1,447,589	+		GFF4521	0.16	-0.0
1,447,589	+		GFF4521	0.16	-0.1
1,447,590	-		GFF4521	0.16	-0.2
1,447,590	-		GFF4521	0.16	-0.3
1,447,590	-		GFF4521	0.16	+0.5
1,447,590	-		GFF4521	0.16	+0.5
1,447,590	-		GFF4521	0.16	+0.7
1,447,590	-		GFF4521	0.16	+0.2
1,447,590	-		GFF4521	0.16	-0.3
1,447,590	-		GFF4521	0.16	+0.2
1,447,592	+		GFF4521	0.16	-1.5
1,447,592	+		GFF4521	0.16	+0.6
1,447,593	-		GFF4521	0.16	-0.3
1,447,593	-		GFF4521	0.16	-1.7
1,447,593	-		GFF4521	0.16	-1.0
1,447,593	-		GFF4521	0.16	+0.0
1,447,593	-		GFF4521	0.16	+0.7
1,447,979	+		GFF4521	0.32	+0.1
1,447,979	+		GFF4521	0.32	-0.3
1,448,018	+		GFF4521	0.34	+1.2
1,448,019	-		GFF4521	0.34	-0.0