Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4499

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,425,718	+		GFF4498	0.54	+0.4
1,425,718	+		GFF4498	0.54	+0.0
1,425,719	-		GFF4498	0.54	+0.2
1,425,739	+		GFF4498	0.56	-0.7
1,425,739	+		GFF4498	0.56	-0.5
1,425,739	+		GFF4498	0.56	+0.1
1,425,739	+		GFF4498	0.56	-0.2
1,425,739	+		GFF4498	0.56	+0.4
1,425,740	-		GFF4498	0.56	-0.4
1,425,740	-		GFF4498	0.56	-0.0
1,425,740	-		GFF4498	0.56	+0.0
1,425,766	+		GFF4498	0.58	-0.3
1,425,766	+		GFF4498	0.58	-0.8
1,425,859	+		GFF4498	0.64	-1.1
1,425,860	-		GFF4498	0.64	+0.1
1,425,860	-		GFF4498	0.64	+0.6
1,425,968	+		GFF4498	0.71	-0.5
1,425,982	+		GFF4498	0.72	+0.2
1,426,408	+				+0.1
1,426,409	-				-0.0
1,426,538	+				+0.5
1,426,538	+				+0.7
1,426,538	+				+0.5
1,426,538	+				+0.6
1,426,539	-				-0.1
1,426,539	-				+1.0
1,426,539	-				+0.2
1,426,539	-				+0.9
1,426,539	-				+0.8
1,426,539	-				-0.1
1,426,539	-				+0.8
1,426,539	-				-1.1
1,426,571	+				+0.1
1,426,571	+				+0.6
1,426,571	+				+0.2
1,426,571	+				+0.6
1,426,571	+				+0.5
1,426,571	+				+0.3
1,426,571	+				+0.5
1,426,571	+				+0.4
1,426,571	+				+0.0
1,426,572	-				-0.3
1,426,572	-				+0.5
1,426,572	-				+0.7
1,426,572	-				+0.4
1,426,572	-				-0.2
1,426,572	-				-1.1
1,426,572	-				-0.3
1,426,580	+		GFF4499	0.10	+0.6
1,427,003	+		GFF4499	0.52	+0.4
1,427,004	-		GFF4499	0.52	-0.8
1,427,120	+		GFF4499	0.64	+0.1
1,427,120	+		GFF4499	0.64	+0.6
1,427,121	-		GFF4499	0.64	+2.5
1,427,121	-		GFF4499	0.64	+0.5
1,427,121	-		GFF4499	0.64	+1.5
1,427,121	-		GFF4499	0.64	-0.1
1,427,414	+				+1.1
1,427,415	-				+0.9
1,427,462	+				-0.1
1,427,463	-				+1.1
1,427,481	+				+0.5
1,427,481	+				-1.1
1,427,481	+				-0.5
1,427,481	+				-0.1
1,427,481	+				-0.2
1,427,481	+				+0.3
1,427,482	-				+0.5
1,427,482	-				+0.8
1,427,482	-				+0.2
1,427,482	-				+0.4
1,427,482	-				-0.7
1,427,482	-				+0.3
1,427,482	-				+0.6
1,427,482	-				+0.6
1,427,482	-				-0.7
1,427,493	+				+0.2
1,427,494	-				-0.1
1,427,539	+				-0.2
1,427,540	-				+0.1
1,427,540	-				+0.7
1,427,540	-				-0.0
1,427,540	-				-0.5
1,427,540	-				+0.6
1,427,559	+				-0.1
1,427,559	+				-0.4
1,427,559	+				-1.8
1,427,559	+				-0.9
1,427,559	+				+0.6
1,427,560	-				-0.2
1,427,560	-				+1.0
1,427,560	-				+0.1
1,427,971	+				-0.5
1,428,052	-				-0.6
1,428,151	+		GFF4501	0.12	-2.7
1,428,151	+		GFF4501	0.12	-1.3
1,428,151	+		GFF4501	0.12	+0.2
1,428,152	-		GFF4501	0.13	-1.3
1,428,152	-		GFF4501	0.13	-0.6
1,428,341	-		GFF4501	0.40	-2.3
1,428,379	+		GFF4501	0.46	-2.2
1,428,379	+		GFF4501	0.46	+0.3
1,428,379	+		GFF4501	0.46	-0.1
1,428,379	+		GFF4501	0.46	-0.2
1,428,379	+		GFF4501	0.46	-1.2
1,428,379	+		GFF4501	0.46	-1.1
1,428,380	-		GFF4501	0.46	-2.5
1,428,380	-		GFF4501	0.46	-0.7