Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4453

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,380,141	+				-0.7
1,380,188	+				+0.1
1,380,188	+				-0.1
1,380,415	-		GFF4452	0.29	+0.3
1,380,493	-		GFF4452	0.40	-0.6
1,380,493	-		GFF4452	0.40	+0.1
1,380,693	+		GFF4452	0.69	+0.2
1,380,693	+		GFF4452	0.69	-1.0
1,380,693	+		GFF4452	0.69	+0.0
1,380,694	-		GFF4452	0.69	+0.2
1,380,694	-		GFF4452	0.69	-0.2
1,380,694	-		GFF4452	0.69	+0.1
1,380,694	-		GFF4452	0.69	-0.4
1,380,759	+		GFF4452	0.78	+0.4
1,381,175	+		GFF4453	0.17	+0.2
1,381,176	-		GFF4453	0.18	-0.4
1,381,382	+		GFF4453	0.31	+0.8
1,381,382	+		GFF4453	0.31	-0.9
1,381,383	-		GFF4453	0.31	-1.7
1,381,383	-		GFF4453	0.31	+0.2
1,381,787	+		GFF4453	0.58	+0.5
1,381,845	-		GFF4453	0.62	+0.2
1,382,943	+		GFF4454	0.51	+0.1
1,382,943	+		GFF4454	0.51	-1.4
1,382,943	+		GFF4454	0.51	-1.7
1,382,943	+		GFF4454	0.51	+0.1
1,382,943	+		GFF4454	0.51	-0.1
1,382,943	+		GFF4454	0.51	-0.8
1,382,944	-		GFF4454	0.51	+0.0
1,382,944	-		GFF4454	0.51	-0.2
1,383,150	+		GFF4454	0.71	-1.0
1,383,285	+		GFF4454	0.84	+0.9