Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4427

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,358,007	+		GFF4425	0.75	-1.0
1,358,007	+		GFF4425	0.75	+0.8
1,358,257	-				+0.7
1,358,296	-				-0.6
1,358,296	-				+0.2
1,358,296	-				+1.0
1,358,318	-				-0.3
1,358,394	+		GFF4426	0.20	+0.0
1,358,395	-		GFF4426	0.20	-0.7
1,358,395	-		GFF4426	0.20	-0.8
1,358,494	+		GFF4426	0.85	+2.2
1,358,740	-				-1.1
1,358,740	-				-0.7
1,358,742	-				-1.5
1,358,762	-				+0.4
1,358,762	-				-0.2
1,358,790	+				+1.4
1,358,871	+				-0.8
1,358,889	+				+0.3
1,359,110	-		GFF4427	0.46	-2.1
1,359,184	+		GFF4427	0.76	-1.6
1,359,306	+				+0.2
1,359,307	-				+0.2
1,359,755	-		GFF4428	0.26	+0.7
1,359,814	+		GFF4428	0.31	+0.5
1,359,815	-		GFF4428	0.31	+0.7
1,359,823	+		GFF4428	0.31	+0.2
1,359,824	-		GFF4428	0.31	-0.7
1,359,867	+		GFF4428	0.35	-1.0
1,360,016	-		GFF4428	0.46	+0.2
1,360,180	+		GFF4428	0.58	+0.3
1,360,205	-		GFF4428	0.59	+0.5
1,360,215	-		GFF4428	0.60	+0.3