Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4347

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,277,559	+		GFF4346	0.52	-0.1
1,277,560	-		GFF4346	0.52	-1.0
1,277,560	-		GFF4346	0.52	+0.6
1,277,590	+		GFF4346	0.54	-0.8
1,277,590	+		GFF4346	0.54	+0.6
1,277,590	+		GFF4346	0.54	+0.5
1,277,590	+		GFF4346	0.54	+1.1
1,277,590	+		GFF4346	0.54	-0.7
1,277,590	+		GFF4346	0.54	+0.8
1,277,590	+		GFF4346	0.54	-0.6
1,277,590	+		GFF4346	0.54	-0.5
1,277,591	-		GFF4346	0.54	+0.2
1,277,591	-		GFF4346	0.54	-0.8
1,277,591	-		GFF4346	0.54	-0.2
1,277,591	-		GFF4346	0.54	-1.0
1,277,591	-		GFF4346	0.54	-0.2
1,277,591	-		GFF4346	0.54	+0.5
1,277,591	-		GFF4346	0.54	+0.1
1,277,591	-		GFF4346	0.54	+0.8
1,277,593	-		GFF4346	0.54	-0.8
1,277,749	+		GFF4346	0.63	-0.2
1,277,749	+		GFF4346	0.63	+0.1
1,277,749	+		GFF4346	0.63	-0.2
1,277,749	+		GFF4346	0.63	-1.3
1,277,750	-		GFF4346	0.63	-0.4
1,277,750	-		GFF4346	0.63	+0.0
1,277,938	+		GFF4346	0.73	-0.3
1,278,031	+		GFF4346	0.78	-0.5
1,278,032	-		GFF4346	0.78	-0.9
1,278,109	+		GFF4346	0.82	+0.1
1,278,109	+		GFF4346	0.82	+0.3
1,278,109	+		GFF4346	0.82	-1.0
1,278,109	+		GFF4346	0.82	-0.1
1,278,109	+		GFF4346	0.82	+0.2
1,278,110	-		GFF4346	0.82	-0.9
1,278,110	-		GFF4346	0.82	+0.3
1,278,169	+		GFF4346	0.86	+0.6
1,278,169	+		GFF4346	0.86	-0.3
1,278,169	+		GFF4346	0.86	-0.8
1,278,169	+		GFF4346	0.86	-0.7
1,278,170	-		GFF4346	0.86	-0.7
1,278,170	-		GFF4346	0.86	-1.3
1,278,170	-		GFF4346	0.86	+0.3
1,278,313	+				+0.1
1,278,313	+				-1.1
1,278,961	+		GFF4347	0.47	-0.2
1,278,961	+		GFF4347	0.47	-0.3
1,278,961	+		GFF4347	0.47	-0.7
1,278,961	+		GFF4347	0.47	+0.1
1,278,961	+		GFF4347	0.47	-0.6
1,278,961	+		GFF4347	0.47	-0.0
1,278,961	+		GFF4347	0.47	+0.1
1,278,961	+		GFF4347	0.47	-0.1
1,278,962	-		GFF4347	0.47	-0.3
1,278,962	-		GFF4347	0.47	-0.4
1,278,962	-		GFF4347	0.47	-1.3
1,278,962	-		GFF4347	0.47	-0.2
1,278,962	-		GFF4347	0.47	+1.0
1,278,967	+		GFF4347	0.48	+0.6
1,278,967	+		GFF4347	0.48	+1.8
1,278,967	+		GFF4347	0.48	+0.4
1,278,967	+		GFF4347	0.48	+0.2
1,278,967	+		GFF4347	0.48	-0.4
1,278,968	-		GFF4347	0.48	+0.0
1,278,968	-		GFF4347	0.48	+0.3
1,278,968	-		GFF4347	0.48	+0.8
1,278,968	-		GFF4347	0.48	-0.5
1,278,968	-		GFF4347	0.48	-0.1
1,279,805	+		GFF4348	0.26	-0.8
1,279,806	-		GFF4348	0.27	+0.8
1,279,832	+		GFF4348	0.29	+0.2
1,279,832	+		GFF4348	0.29	-1.1
1,279,832	+		GFF4348	0.29	+0.2
1,279,833	-		GFF4348	0.29	-1.0
1,279,844	+		GFF4348	0.30	-0.5
1,279,845	-		GFF4348	0.30	+0.5
1,279,985	+		GFF4348	0.43	-0.1
1,279,985	+		GFF4348	0.43	+0.1
1,279,986	-		GFF4348	0.43	-0.3
1,279,986	-		GFF4348	0.43	-0.5
1,280,021	+		GFF4348	0.46	-1.2
1,280,022	-		GFF4348	0.46	-0.4
1,280,022	-		GFF4348	0.46	+0.1