Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4316

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,243,863	-		GFF4315	0.58	+0.2
1,243,863	-		GFF4315	0.58	+0.2
1,244,313	-		GFF4315	0.79	-0.2
1,244,313	-		GFF4315	0.79	+0.4
1,244,414	+		GFF4315	0.84	-1.0
1,244,414	+		GFF4315	0.84	+0.5
1,244,954	-		GFF4316	0.48	+1.9
1,245,070	+		GFF4316	0.71	-0.8
1,245,071	-		GFF4316	0.71	+2.0
1,245,166	+				-0.3
1,245,166	+				+0.1
1,245,167	-				-1.1
1,245,495	+		GFF4317	0.38	+0.2
1,245,495	+		GFF4317	0.38	-0.4
1,245,495	+		GFF4317	0.38	+1.0
1,245,496	-		GFF4317	0.38	+0.7
1,245,496	-		GFF4317	0.38	-0.1
1,245,496	-		GFF4317	0.38	-1.0
1,245,496	-		GFF4317	0.38	-0.5
1,245,599	+		GFF4317	0.52	-0.4
1,245,663	+		GFF4317	0.61	-0.9
1,245,664	-		GFF4317	0.61	-0.7
1,245,664	-		GFF4317	0.61	+0.4
1,246,092	+		GFF4318	0.11	+0.3