Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4284

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,210,142	+		GFF4283	0.21	-0.9
1,210,142	+		GFF4283	0.21	-0.7
1,210,142	+		GFF4283	0.21	+0.0
1,210,142	+		GFF4283	0.21	-0.2
1,210,143	-		GFF4283	0.21	+0.1
1,210,143	-		GFF4283	0.21	+0.2
1,210,143	-		GFF4283	0.21	-0.5
1,210,295	+		GFF4283	0.41	-0.1
1,210,295	+		GFF4283	0.41	-0.3
1,210,295	+		GFF4283	0.41	+0.4
1,210,295	+		GFF4283	0.41	+1.7
1,210,296	-		GFF4283	0.41	+0.1
1,210,296	-		GFF4283	0.41	-0.3
1,210,296	-		GFF4283	0.41	+0.3
1,210,296	-		GFF4283	0.41	+0.8
1,210,412	+		GFF4283	0.57	+0.0
1,210,427	+		GFF4283	0.59	-0.3
1,210,427	+		GFF4283	0.59	-0.0
1,210,427	+		GFF4283	0.59	+0.5
1,210,427	+		GFF4283	0.59	-0.9
1,210,427	+		GFF4283	0.59	-0.4
1,210,428	-		GFF4283	0.59	-0.2
1,210,428	-		GFF4283	0.59	-0.1
1,210,428	-		GFF4283	0.59	-0.9
1,210,428	-		GFF4283	0.59	-0.2
1,210,428	-		GFF4283	0.59	-2.3
1,210,428	-		GFF4283	0.59	-0.4
1,210,428	-		GFF4283	0.59	+0.1
1,210,428	-		GFF4283	0.59	-0.8
1,210,428	-		GFF4283	0.59	-0.2
1,210,428	-		GFF4283	0.59	-0.8
1,210,577	+		GFF4283	0.79	+0.7
1,210,815	+				+0.3
1,210,815	+				-0.3
1,210,952	+				+0.5
1,210,952	+				+1.4
1,210,952	+				+1.3
1,210,953	-				+0.9
1,210,953	-				+1.0
1,210,953	-				+0.4
1,210,953	-				+1.5
1,210,953	-				+1.0
1,210,953	-				+0.6
1,210,953	-				-1.0
1,210,953	-				+0.7
1,210,953	-				+0.9
1,210,982	+		GFF4284	0.12	+1.0
1,210,991	+		GFF4284	0.14	+0.6
1,210,991	+		GFF4284	0.14	+0.1
1,210,992	-		GFF4284	0.14	+0.8
1,210,992	-		GFF4284	0.14	+0.6
1,210,992	-		GFF4284	0.14	+1.3
1,210,992	-		GFF4284	0.14	+0.8
1,210,992	-		GFF4284	0.14	+1.3
1,211,045	+		GFF4284	0.21	+0.8
1,211,045	+		GFF4284	0.21	+1.5
1,211,045	+		GFF4284	0.21	+1.1
1,211,045	+		GFF4284	0.21	-1.3
1,211,045	+		GFF4284	0.21	+0.2
1,211,046	-		GFF4284	0.21	+1.0
1,211,046	-		GFF4284	0.21	+0.9
1,211,046	-		GFF4284	0.21	-1.3
1,211,046	-		GFF4284	0.21	+0.4
1,211,054	+		GFF4284	0.22	+1.0
1,211,055	-		GFF4284	0.22	+1.0
1,211,078	+		GFF4284	0.25	+2.7
1,211,078	+		GFF4284	0.25	+1.2
1,211,078	+		GFF4284	0.25	+1.4
1,211,078	+		GFF4284	0.25	+0.2
1,211,078	+		GFF4284	0.25	+0.8
1,211,078	+		GFF4284	0.25	+0.9
1,211,079	-		GFF4284	0.25	+0.2
1,211,079	-		GFF4284	0.25	+1.1
1,211,079	-		GFF4284	0.25	+0.8
1,211,079	-		GFF4284	0.25	-0.3
1,211,081	+		GFF4284	0.26	+0.8
1,211,087	+		GFF4284	0.27	+1.0
1,211,087	+		GFF4284	0.27	+1.1
1,211,087	+		GFF4284	0.27	+0.9
1,211,087	+		GFF4284	0.27	+1.2
1,211,087	+		GFF4284	0.27	+1.0
1,211,087	+		GFF4284	0.27	+0.7
1,211,087	+		GFF4284	0.27	+0.9
1,211,088	-		GFF4284	0.27	+1.3
1,211,088	-		GFF4284	0.27	+1.0
1,211,088	-		GFF4284	0.27	+1.3
1,211,222	+		GFF4284	0.45	+1.2
1,211,222	+		GFF4284	0.45	+0.4
1,211,223	-		GFF4284	0.45	+1.1
1,211,223	-		GFF4284	0.45	+1.1
1,211,223	-		GFF4284	0.45	+1.3
1,211,276	+		GFF4284	0.52	+1.4
1,211,277	-		GFF4284	0.52	+1.0
1,211,285	+		GFF4284	0.53	+1.0
1,211,285	+		GFF4284	0.53	-0.1
1,211,286	-		GFF4284	0.54	+1.2
1,211,286	-		GFF4284	0.54	+1.6
1,211,286	-		GFF4284	0.54	+1.7
1,211,286	-		GFF4284	0.54	+1.3
1,211,294	+		GFF4284	0.55	+0.8
1,211,294	+		GFF4284	0.55	+0.3
1,211,294	+		GFF4284	0.55	+1.7
1,211,295	-		GFF4284	0.55	+0.8
1,211,436	-		GFF4284	0.74	+0.9
1,211,444	+		GFF4284	0.75	+0.3
1,211,445	-		GFF4284	0.75	+1.4
1,211,445	-		GFF4284	0.75	+1.8
1,211,558	+				+1.5
1,211,558	+				+1.2
1,211,558	+				+0.9
1,211,558	+				+0.9
1,211,558	+				+0.2
1,211,558	+				+1.0
1,211,558	+				+0.5
1,211,559	-				+0.9
1,211,559	-				+1.4
1,211,559	-				+1.3
1,211,559	-				+1.8
1,211,559	-				+1.7
1,211,665	+				+0.8
1,211,666	-				-0.3
1,211,668	-				-1.5
1,211,668	-				+0.1
1,211,668	-				-1.6
1,211,668	-				-1.1
1,211,668	-				-0.5
1,211,668	-				-0.6
1,211,668	-				+0.6
1,211,668	-				-1.7
1,211,887	+		GFF4285	0.41	+0.1
1,211,888	-		GFF4285	0.41	-0.1
1,211,914	+		GFF4285	0.45	+1.2
1,211,915	-		GFF4285	0.45	+0.0
1,211,989	+		GFF4285	0.57	-0.5
1,212,220	+				+0.2
1,212,220	+				-0.7
1,212,220	+				-0.3
1,212,220	+				+1.2
1,212,220	+				-0.1
1,212,221	-				-0.7
1,212,244	+				-0.4
1,212,245	-				-0.5
1,212,401	+				-0.8
1,212,401	+				+1.0
1,212,401	+				+0.4
1,212,401	+				+0.2
1,212,401	+				-0.9
1,212,401	+				-0.2
1,212,401	+				+1.1
1,212,401	+				-0.1
1,212,401	+				-0.7
1,212,401	+				+0.1
1,212,401	+				-1.7
1,212,402	-				-0.8
1,212,402	-				+0.9
1,212,402	-				+0.8
1,212,402	-				-0.2
1,212,402	-				+1.7
1,212,402	-				+0.0
1,212,402	-				-0.6
1,212,402	-				+0.0
1,212,402	-				+0.0
1,212,402	-				+0.1
1,212,402	-				-0.3
1,212,402	-				-0.4
1,212,402	-				-0.1
1,212,525	-		GFF4286	0.33	+0.1
1,212,611	+		GFF4286	0.55	+0.4
1,212,611	+		GFF4286	0.55	-0.0
1,212,612	-		GFF4286	0.55	-1.1