Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4232

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,145,278	+		GFF4231	0.25	-0.6
1,145,451	+		GFF4231	0.43	+0.2
1,145,451	+		GFF4231	0.43	-0.5
1,145,451	+		GFF4231	0.43	+0.9
1,145,451	+		GFF4231	0.43	-0.1
1,145,452	-		GFF4231	0.43	-1.1
1,145,452	-		GFF4231	0.43	+0.6
1,145,452	-		GFF4231	0.43	+0.3
1,145,496	+		GFF4231	0.47	+0.2
1,145,497	-		GFF4231	0.47	+0.1
1,145,685	+		GFF4231	0.66	+0.4
1,145,686	-		GFF4231	0.66	+0.7
1,146,026	+				+0.1
1,146,027	-				-0.0
1,146,027	-				-0.4
1,146,056	+				+0.9
1,146,056	+				-0.6
1,146,056	+				-0.5
1,146,057	-				+0.1
1,146,317	+		GFF4232	0.33	-0.5
1,146,317	+		GFF4232	0.33	+0.2
1,146,317	+		GFF4232	0.33	+1.1
1,146,317	+		GFF4232	0.33	-2.2
1,146,318	-		GFF4232	0.33	+0.7
1,146,318	-		GFF4232	0.33	+0.0
1,146,329	+		GFF4232	0.34	+0.5
1,146,419	+		GFF4232	0.45	-2.2
1,146,420	-		GFF4232	0.45	-0.5
1,146,420	-		GFF4232	0.45	-1.4
1,146,420	-		GFF4232	0.45	-0.2
1,146,420	-		GFF4232	0.45	-1.0
1,146,780	-		GFF4232	0.87	+0.5
1,146,780	-		GFF4232	0.87	+0.4
1,146,909	-				-0.1
1,147,015	+		GFF4233	0.10	-0.1
1,147,135	+		GFF4233	0.25	+0.2
1,147,135	+		GFF4233	0.25	+0.4
1,147,135	+		GFF4233	0.25	-1.2
1,147,135	+		GFF4233	0.25	+0.4
1,147,135	+		GFF4233	0.25	+0.3
1,147,135	+		GFF4233	0.25	-0.1
1,147,136	-		GFF4233	0.26	-0.2
1,147,136	-		GFF4233	0.26	+0.1
1,147,136	-		GFF4233	0.26	+1.1
1,147,136	-		GFF4233	0.26	-0.2
1,147,136	-		GFF4233	0.26	+0.6
1,147,136	-		GFF4233	0.26	-0.4
1,147,136	-		GFF4233	0.26	+0.3
1,147,144	+		GFF4233	0.27	+0.1
1,147,144	+		GFF4233	0.27	+1.8
1,147,180	+		GFF4233	0.31	+0.1
1,147,180	+		GFF4233	0.31	-0.2
1,147,181	-		GFF4233	0.31	-0.4
1,147,310	-		GFF4233	0.47	+1.4
1,147,310	-		GFF4233	0.47	+0.6
1,147,497	+		GFF4233	0.71	+0.8
1,147,497	+		GFF4233	0.71	+0.2
1,147,497	+		GFF4233	0.71	+0.1
1,147,497	+		GFF4233	0.71	-0.0
1,147,498	-		GFF4233	0.71	+0.5
1,147,564	+		GFF4233	0.79	-0.7
1,147,564	+		GFF4233	0.79	-1.0
1,147,565	-		GFF4233	0.79	+0.1
1,147,618	+		GFF4233	0.86	-0.2
1,147,618	+		GFF4233	0.86	-0.5
1,147,618	+		GFF4233	0.86	-0.5
1,147,619	-		GFF4233	0.86	-0.4
1,147,619	-		GFF4233	0.86	-0.0
1,147,619	-		GFF4233	0.86	-0.3
1,147,627	+		GFF4233	0.87	-1.6
1,147,627	+		GFF4233	0.87	-1.1
1,147,627	+		GFF4233	0.87	-0.3
1,147,628	-		GFF4233	0.87	-0.5
1,147,628	-		GFF4233	0.87	+0.2
1,147,633	+		GFF4233	0.88	+0.5
1,147,634	-		GFF4233	0.88	-0.5
1,147,634	-		GFF4233	0.88	+0.4
1,147,634	-		GFF4233	0.88	-0.8
1,147,634	-		GFF4233	0.88	-0.1
1,147,634	-		GFF4233	0.88	-0.6
1,147,634	-		GFF4233	0.88	-0.5
1,147,634	-		GFF4233	0.88	-0.1
1,147,634	-		GFF4233	0.88	-1.4
1,147,675	+				-0.5
1,147,708	+				+1.2
1,147,708	+				-0.4
1,147,709	-				-2.7
1,147,709	-				-1.1
1,147,709	-				-0.1
1,147,709	-				-0.7
1,147,709	-				-0.1
1,147,709	-				+0.2
1,147,709	-				+1.7
1,147,874	-		GFF4234	0.16	-0.8