Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4174

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,089,511	+		GFF4172	0.55	+0.8
1,089,511	+		GFF4172	0.55	-0.3
1,089,527	+		GFF4172	0.57	-0.4
1,089,527	+		GFF4172	0.57	+0.4
1,089,553	-		GFF4172	0.60	+0.4
1,089,685	+		GFF4172	0.74	+0.2
1,089,685	+		GFF4172	0.74	-2.8
1,089,685	+		GFF4172	0.74	-0.1
1,089,725	+		GFF4172	0.78	-0.5
1,089,754	+		GFF4172	0.81	-1.9
1,089,778	+		GFF4172	0.84	-0.4
1,089,778	+		GFF4172	0.84	-0.5
1,089,778	+		GFF4172	0.84	+1.9
1,089,778	+		GFF4172	0.84	-0.4
1,089,778	+		GFF4172	0.84	-0.7
1,089,779	-		GFF4172	0.84	-0.3
1,089,795	+		GFF4172	0.85	+1.0
1,089,795	+		GFF4172	0.85	-0.0
1,089,795	+		GFF4172	0.85	-0.5
1,089,795	+		GFF4172	0.85	+0.1
1,089,795	+		GFF4172	0.85	+0.3
1,089,795	+		GFF4172	0.85	+0.9
1,089,795	+		GFF4172	0.85	+1.6
1,089,795	+		GFF4172	0.85	-0.4
1,089,795	+		GFF4172	0.85	-1.8
1,089,796	-		GFF4172	0.86	+0.1
1,089,796	-		GFF4172	0.86	-0.5
1,089,796	-		GFF4172	0.86	+0.3
1,089,853	+				+0.5
1,089,853	+				+0.3
1,089,854	-				-0.6
1,090,022	-		GFF4173	0.33	+0.2
1,090,063	+		GFF4173	0.48	-1.0
1,090,063	+		GFF4173	0.48	-0.4
1,090,064	-		GFF4173	0.48	+1.0
1,090,064	-		GFF4173	0.48	-0.7
1,090,064	-		GFF4173	0.48	-1.1
1,090,064	-		GFF4173	0.48	+0.1
1,090,154	+		GFF4173	0.81	-2.1
1,090,154	+		GFF4173	0.81	+0.2
1,090,154	+		GFF4173	0.81	+0.1
1,090,155	-		GFF4173	0.81	+0.2
1,090,155	-		GFF4173	0.81	+0.3
1,090,155	-		GFF4173	0.81	+0.8
1,090,155	-		GFF4173	0.81	-0.1
1,090,176	-		GFF4173	0.89	+0.6
1,090,177	+		GFF4173	0.89	+1.5
1,090,177	+		GFF4173	0.89	+0.0
1,090,177	+		GFF4173	0.89	-0.2
1,090,178	-		GFF4173	0.89	-1.0
1,090,178	-		GFF4173	0.89	+0.5
1,090,178	-		GFF4173	0.89	-1.7
1,090,178	-		GFF4173	0.89	-0.1
1,090,178	-		GFF4173	0.89	-1.1
1,090,483	+				+0.5
1,090,483	+				-0.1
1,090,483	+				-0.2
1,090,483	+				+0.7
1,090,552	+				-0.5
1,090,552	+				+0.0
1,090,552	+				+0.4
1,090,552	+				-0.4
1,090,552	+				+0.2
1,090,552	+				+0.1
1,090,553	-				-0.3
1,090,553	-				-0.1
1,090,553	-				-0.3
1,090,761	+		GFF4174	0.16	-0.1
1,090,854	+		GFF4174	0.21	-0.3
1,091,067	+		GFF4174	0.31	+0.4
1,091,067	+		GFF4174	0.31	-1.9
1,091,067	+		GFF4174	0.31	-0.7
1,091,067	+		GFF4174	0.31	-0.6
1,091,067	+		GFF4174	0.31	-0.6
1,091,067	+		GFF4174	0.31	+1.7
1,091,068	-		GFF4174	0.31	-0.4
1,091,068	-		GFF4174	0.31	-2.2
1,091,068	-		GFF4174	0.31	+0.1
1,091,068	-		GFF4174	0.31	+1.3
1,091,068	-		GFF4174	0.31	-0.4
1,091,068	-		GFF4174	0.31	+0.1
1,091,068	-		GFF4174	0.31	-0.8
1,091,226	+		GFF4174	0.39	-0.3
1,091,526	+		GFF4174	0.54	+0.4
1,091,527	-		GFF4174	0.54	-0.5
1,091,527	-		GFF4174	0.54	-2.5
1,091,527	-		GFF4174	0.54	-0.1
1,091,527	-		GFF4174	0.54	+0.4
1,091,784	+		GFF4174	0.67	-0.9
1,091,784	+		GFF4174	0.67	+0.1
1,091,785	-		GFF4174	0.67	+0.0
1,091,913	+		GFF4174	0.73	+0.4
1,091,914	-		GFF4174	0.74	+1.3
1,091,914	-		GFF4174	0.74	-1.1
1,091,914	-		GFF4174	0.74	-0.9
1,091,942	-		GFF4174	0.75	+0.0
1,092,076	-		GFF4174	0.82	-0.1
1,092,439	+				-1.1
1,092,439	+				+2.1
1,092,439	+				-0.3
1,092,449	+				+0.2
1,092,637	+		GFF4175	0.42	+0.3
1,092,638	-		GFF4175	0.43	-0.6
1,092,689	+		GFF4175	0.54	-1.6
1,092,689	+		GFF4175	0.54	-0.1
1,092,692	+		GFF4175	0.54	+0.2
1,092,692	+		GFF4175	0.54	-0.3
1,092,692	+		GFF4175	0.54	+0.4
1,092,692	+		GFF4175	0.54	-1.0
1,092,692	+		GFF4175	0.54	-0.3
1,092,693	-		GFF4175	0.54	+0.5
1,092,693	-		GFF4175	0.54	-1.3
1,093,289	-		GFF4176	0.37	+0.5