Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4142

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,051,329	+		GFF4139	0.71	-0.4
1,051,329	+		GFF4139	0.71	-0.1
1,051,329	+		GFF4139	0.71	-1.0
1,051,330	-		GFF4139	0.71	+0.4
1,051,330	-		GFF4139	0.71	-0.1
1,052,198	-		GFF4141	0.62	+0.4
1,052,325	+				-0.1
1,052,325	+				-0.1
1,052,326	-				+0.1
1,052,407	-		GFF4142	0.20	+1.2
1,052,407	-		GFF4142	0.20	+0.2
1,052,808	+		GFF4142	0.76	+0.5
1,052,809	-		GFF4142	0.76	-1.7
1,052,809	-		GFF4142	0.76	-0.8
1,052,809	-		GFF4142	0.76	-0.0
1,052,984	+				+0.5
1,053,012	+				+0.3
1,053,013	-				-0.5
1,053,020	-				-0.3
1,053,197	-				-0.3
1,053,250	+				+0.7
1,053,250	+				-1.5
1,053,251	-				-2.0
1,053,307	+		GFF4143	0.12	-0.0
1,053,308	-		GFF4143	0.12	+2.6
1,053,308	-		GFF4143	0.12	-1.1
1,053,340	+		GFF4143	0.15	+0.0
1,053,340	+		GFF4143	0.15	-0.2
1,053,343	+		GFF4143	0.15	+0.1
1,053,343	+		GFF4143	0.15	+1.7
1,053,395	-		GFF4143	0.19	-0.5
1,053,403	+		GFF4143	0.19	-0.8
1,053,403	+		GFF4143	0.19	+0.3
1,053,403	+		GFF4143	0.19	-1.1
1,053,569	-		GFF4143	0.31	-0.7
1,053,863	-		GFF4143	0.52	+0.1
1,053,868	+		GFF4143	0.53	-1.0