Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4118

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
1,028,312	+		GFF4115	0.78	+0.5
1,028,312	+		GFF4115	0.78	-1.2
1,028,312	+		GFF4115	0.78	-1.9
1,028,806	+		GFF4116	0.80	-0.8
1,028,807	-		GFF4116	0.80	-0.8
1,028,854	+		GFF4116	0.89	+0.0
1,028,918	+				-0.5
1,028,918	+				-0.6
1,028,919	-				-0.8
1,028,981	+		GFF4117	0.22	-0.0
1,028,981	+		GFF4117	0.22	-1.0
1,029,441	+		GFF4118	0.25	-0.1
1,029,441	+		GFF4118	0.25	-0.6
1,029,442	-		GFF4118	0.26	-0.7
1,029,624	+		GFF4118	0.49	-0.5
1,029,624	+		GFF4118	0.49	-0.7
1,029,702	+		GFF4118	0.59	-0.2
1,029,703	-		GFF4118	0.59	-0.8
1,029,703	-		GFF4118	0.59	+0.2
1,029,864	+		GFF4118	0.79	+0.2
1,029,864	+		GFF4118	0.79	+0.5
1,029,865	-		GFF4118	0.80	+0.0
1,030,305	-		GFF4119	0.31	+0.5
1,030,305	-		GFF4119	0.31	-0.7
1,030,305	-		GFF4119	0.31	-0.1
1,030,872	-				-1.7
1,030,872	-				-1.1