Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4043

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4040 and GFF4041 are separated by 137 nucleotidesGFF4041 and GFF4042 overlap by 68 nucleotidesGFF4042 and GFF4043 are separated by 135 nucleotidesGFF4043 and GFF4044 are separated by 87 nucleotides GFF4040 - Cell division trigger factor (EC 5.2.1.8), at 959,588 to 960,898 GFF4040 GFF4041 - hypothetical protein, at 961,036 to 961,155 GFF4041 GFF4042 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 961,088 to 961,705 GFF4042 GFF4043 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 961,841 to 963,106 GFF4043 GFF4044 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 963,194 to 965,626 GFF4044 Position (kb) 961 962 963 964Strain fitness (log2 ratio) -1 0 1 2 3 4at 961.047 kb on + strandat 961.047 kb on + strandat 961.047 kb on + strandat 961.048 kb on - strand, within GFF4041at 961.048 kb on - strand, within GFF4041at 961.048 kb on - strand, within GFF4041at 961.048 kb on - strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.058 kb on + strand, within GFF4041at 961.058 kb on + strand, within GFF4041at 961.059 kb on - strand, within GFF4041at 961.163 kb on + strand, within GFF4042at 961.164 kb on - strand, within GFF4042at 961.164 kb on - strand, within GFF4042at 961.172 kb on + strand, within GFF4042at 961.172 kb on + strand, within GFF4042at 961.239 kb on + strand, within GFF4042at 961.239 kb on + strand, within GFF4042at 961.240 kb on - strand, within GFF4042at 961.240 kb on - strand, within GFF4042at 961.298 kb on + strand, within GFF4042at 961.298 kb on + strand, within GFF4042at 961.299 kb on - strand, within GFF4042at 961.299 kb on - strand, within GFF4042at 961.299 kb on - strand, within GFF4042at 961.628 kb on + strand, within GFF4042at 961.631 kb on + strand, within GFF4042at 961.632 kb on - strand, within GFF4042at 961.658 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.814 kb on + strandat 961.814 kb on + strandat 961.814 kb on + strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.840 kb on + strandat 961.840 kb on + strandat 961.840 kb on + strandat 961.880 kb on + strandat 961.880 kb on + strandat 961.881 kb on - strandat 961.881 kb on - strandat 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.121 kb on - strand, within GFF4043at 962.121 kb on - strand, within GFF4043at 962.129 kb on + strand, within GFF4043at 962.129 kb on + strand, within GFF4043at 962.129 kb on + strand, within GFF4043at 962.307 kb on - strand, within GFF4043at 962.360 kb on + strand, within GFF4043at 962.360 kb on + strand, within GFF4043at 962.360 kb on + strand, within GFF4043at 962.360 kb on + strand, within GFF4043at 962.361 kb on - strand, within GFF4043at 962.361 kb on - strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.393 kb on + strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 962.394 kb on - strand, within GFF4043at 963.080 kb on + strandat 963.080 kb on + strandat 963.081 kb on - strandat 963.171 kb on + strandat 963.171 kb on + strandat 963.172 kb on - strandat 963.172 kb on - strandat 963.635 kb on + strand, within GFF4044at 963.635 kb on + strand, within GFF4044at 963.635 kb on + strand, within GFF4044at 963.635 kb on + strand, within GFF4044at 963.635 kb on + strand, within GFF4044at 963.635 kb on + strand, within GFF4044at 963.636 kb on - strand, within GFF4044at 963.636 kb on - strand, within GFF4044at 963.636 kb on - strand, within GFF4044at 963.636 kb on - strand, within GFF4044at 963.899 kb on + strand, within GFF4044at 963.899 kb on + strand, within GFF4044at 963.899 kb on + strand, within GFF4044at 963.899 kb on + strand, within GFF4044at 963.900 kb on - strand, within GFF4044at 963.900 kb on - strand, within GFF4044at 963.900 kb on - strand, within GFF4044at 963.985 kb on + strand, within GFF4044at 963.985 kb on + strand, within GFF4044at 963.986 kb on - strand, within GFF4044at 963.986 kb on - strand, within GFF4044at 963.986 kb on - strand, within GFF4044at 964.091 kb on + strand, within GFF4044at 964.091 kb on + strand, within GFF4044at 964.091 kb on + strand, within GFF4044at 964.091 kb on + strand, within GFF4044at 964.091 kb on + strand, within GFF4044at 964.091 kb on + strand, within GFF4044at 964.092 kb on - strand, within GFF4044at 964.092 kb on - strand, within GFF4044at 964.092 kb on - strand, within GFF4044at 964.092 kb on - strand, within GFF4044at 964.092 kb on - strand, within GFF4044at 964.092 kb on - strand, within GFF4044at 964.092 kb on - strand, within GFF4044at 964.092 kb on - strand, within GFF4044at 964.092 kb on - strand, within GFF4044

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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961,047 + -0.8
961,047 + -0.7
961,047 + -0.9
961,048 - GFF4041 0.10 +0.3
961,048 - GFF4041 0.10 -0.9
961,048 - GFF4041 0.10 -0.2
961,048 - GFF4041 0.10 +0.4
961,052 + GFF4041 0.13 +0.1
961,052 + GFF4041 0.13 -0.5
961,052 + GFF4041 0.13 -0.7
961,052 + GFF4041 0.13 -0.1
961,052 + GFF4041 0.13 -0.9
961,052 + GFF4041 0.13 +1.2
961,053 - GFF4041 0.14 -1.3
961,053 - GFF4041 0.14 +0.9
961,053 - GFF4041 0.14 +1.2
961,053 - GFF4041 0.14 +1.7
961,053 - GFF4041 0.14 +2.3
961,058 + GFF4041 0.18 +0.1
961,058 + GFF4041 0.18 +0.3
961,059 - GFF4041 0.19 +1.6
961,163 + GFF4042 0.12 -0.7
961,164 - GFF4042 0.12 -0.7
961,164 - GFF4042 0.12 -0.7
961,172 + GFF4042 0.14 -0.5
961,172 + GFF4042 0.14 -0.3
961,239 + GFF4042 0.24 -0.2
961,239 + GFF4042 0.24 +0.7
961,240 - GFF4042 0.25 -0.1
961,240 - GFF4042 0.25 -1.3
961,298 + GFF4042 0.34 -0.5
961,298 + GFF4042 0.34 -0.2
961,299 - GFF4042 0.34 -1.1
961,299 - GFF4042 0.34 +1.3
961,299 - GFF4042 0.34 -0.8
961,628 + GFF4042 0.87 -0.5
961,631 + GFF4042 0.88 +0.5
961,632 - GFF4042 0.88 -0.5
961,658 + -0.8
961,802 + -0.9
961,802 + +0.2
961,802 + -0.2
961,802 + -0.2
961,802 + +0.1
961,802 + +0.1
961,802 + -0.8
961,802 + +0.2
961,802 + -0.6
961,802 + -1.1
961,803 - +0.0
961,803 - -1.7
961,803 - +0.1
961,803 - +0.3
961,803 - -0.1
961,803 - +0.4
961,803 - -0.7
961,803 - -0.5
961,803 - -0.2
961,814 + +2.1
961,814 + +0.7
961,814 + +1.0
961,815 - +0.5
961,815 - +1.2
961,815 - +1.3
961,815 - +2.5
961,815 - +1.4
961,815 - +2.5
961,840 + +1.4
961,840 + +1.2
961,840 + +1.1
961,880 + +0.5
961,880 + +0.8
961,881 - +1.8
961,881 - +1.3
962,072 + GFF4043 0.18 +1.2
962,072 + GFF4043 0.18 +1.5
962,072 + GFF4043 0.18 +1.5
962,072 + GFF4043 0.18 +1.1
962,072 + GFF4043 0.18 +2.3
962,072 + GFF4043 0.18 +0.8
962,072 + GFF4043 0.18 +1.2
962,072 + GFF4043 0.18 +1.4
962,072 + GFF4043 0.18 +1.1
962,073 - GFF4043 0.18 -0.8
962,073 - GFF4043 0.18 +0.8
962,073 - GFF4043 0.18 +2.3
962,073 - GFF4043 0.18 +0.3
962,073 - GFF4043 0.18 +1.0
962,073 - GFF4043 0.18 +0.5
962,073 - GFF4043 0.18 +2.3
962,073 - GFF4043 0.18 +0.5
962,073 - GFF4043 0.18 +1.1
962,073 - GFF4043 0.18 +0.9
962,073 - GFF4043 0.18 +0.9
962,073 - GFF4043 0.18 -0.1
962,121 - GFF4043 0.22 +1.4
962,121 - GFF4043 0.22 +1.0
962,129 + GFF4043 0.23 +1.5
962,129 + GFF4043 0.23 +1.1
962,129 + GFF4043 0.23 +0.8
962,307 - GFF4043 0.37 +0.4
962,360 + GFF4043 0.41 +0.4
962,360 + GFF4043 0.41 +1.2
962,360 + GFF4043 0.41 +1.2
962,360 + GFF4043 0.41 +1.7
962,361 - GFF4043 0.41 +0.0
962,361 - GFF4043 0.41 -0.4
962,393 + GFF4043 0.44 +1.1
962,393 + GFF4043 0.44 -0.1
962,393 + GFF4043 0.44 +1.1
962,393 + GFF4043 0.44 +1.8
962,393 + GFF4043 0.44 +1.2
962,393 + GFF4043 0.44 +1.4
962,393 + GFF4043 0.44 +1.7
962,393 + GFF4043 0.44 +1.7
962,393 + GFF4043 0.44 +0.9
962,393 + GFF4043 0.44 +1.6
962,394 - GFF4043 0.44 +1.6
962,394 - GFF4043 0.44 +0.2
962,394 - GFF4043 0.44 -0.0
962,394 - GFF4043 0.44 +1.1
962,394 - GFF4043 0.44 +1.0
962,394 - GFF4043 0.44 +0.8
962,394 - GFF4043 0.44 +1.5
962,394 - GFF4043 0.44 +0.7
962,394 - GFF4043 0.44 +0.4
963,080 + +0.9
963,080 + +1.2
963,081 - +1.4
963,171 + +0.5
963,171 + +1.0
963,172 - +2.2
963,172 - +0.8
963,635 + GFF4044 0.18 +1.2
963,635 + GFF4044 0.18 +1.3
963,635 + GFF4044 0.18 +1.2
963,635 + GFF4044 0.18 +0.8
963,635 + GFF4044 0.18 +0.7
963,635 + GFF4044 0.18 +1.6
963,636 - GFF4044 0.18 +1.1
963,636 - GFF4044 0.18 +1.0
963,636 - GFF4044 0.18 +0.5
963,636 - GFF4044 0.18 +4.1
963,899 + GFF4044 0.29 +1.0
963,899 + GFF4044 0.29 +0.7
963,899 + GFF4044 0.29 +1.0
963,899 + GFF4044 0.29 +1.2
963,900 - GFF4044 0.29 +0.4
963,900 - GFF4044 0.29 +1.0
963,900 - GFF4044 0.29 +0.1
963,985 + GFF4044 0.33 +0.4
963,985 + GFF4044 0.33 +0.7
963,986 - GFF4044 0.33 +1.9
963,986 - GFF4044 0.33 +0.5
963,986 - GFF4044 0.33 +1.7
964,091 + GFF4044 0.37 +1.9
964,091 + GFF4044 0.37 +0.9
964,091 + GFF4044 0.37 +1.2
964,091 + GFF4044 0.37 +1.3
964,091 + GFF4044 0.37 +0.9
964,091 + GFF4044 0.37 +1.8
964,092 - GFF4044 0.37 +1.2
964,092 - GFF4044 0.37 +1.3
964,092 - GFF4044 0.37 +1.2
964,092 - GFF4044 0.37 -0.2
964,092 - GFF4044 0.37 +2.5
964,092 - GFF4044 0.37 +1.4
964,092 - GFF4044 0.37 +0.6
964,092 - GFF4044 0.37 +1.5
964,092 - GFF4044 0.37 +0.9

Or see this region's nucleotide sequence