Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3938 and GFF3939 overlap by 4 nucleotides GFF3939 and GFF3940 are separated by 1 nucleotides GFF3940 and GFF3941 are separated by 1 nucleotides GFF3941 and GFF3942 are separated by 46 nucleotides
GFF3938 - Molybdopterin biosynthesis protein MoeA, at 851,436 to 852,692
GFF3938
GFF3939 - Molybdenum cofactor biosynthesis protein MoaD, at 852,689 to 852,940
GFF3939
GFF3940 - Molybdenum cofactor biosynthesis protein MoaE, at 852,942 to 853,415
GFF3940
GFF3941 - GCN5-related N-acetyltransferase, at 853,417 to 854,172
GFF3941
GFF3942 - ClpB protein, at 854,219 to 856,837
GFF3942
Position (kb) 853
854
855 Strain fitness (log2 ratio) -2
-1
0
1 at 852.663 kb on + strand at 852.663 kb on + strand at 852.664 kb on - strand at 852.664 kb on - strand at 852.664 kb on - strand at 852.664 kb on - strand at 852.815 kb on + strand, within GFF3939 at 852.816 kb on - strand, within GFF3939 at 853.290 kb on + strand, within GFF3940 at 853.290 kb on + strand, within GFF3940 at 853.290 kb on + strand, within GFF3940 at 853.886 kb on - strand, within GFF3941 at 854.300 kb on + strand at 854.301 kb on - strand at 854.702 kb on + strand, within GFF3942
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 852,663 + +0.7 852,663 + +0.2 852,664 - -0.4 852,664 - +1.0 852,664 - -1.7 852,664 - +0.4 852,815 + GFF3939 0.50 +0.6 852,816 - GFF3939 0.50 -0.4 853,290 + GFF3940 0.73 -0.6 853,290 + GFF3940 0.73 -1.0 853,290 + GFF3940 0.73 -2.1 853,886 - GFF3941 0.62 -0.3 854,300 + +0.4 854,301 - -1.1 854,702 + GFF3942 0.18 -0.1
Or see this region's nucleotide sequence