Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3873 and GFF3874 are separated by 2 nucleotides GFF3874 and GFF3875 overlap by 4 nucleotides
GFF3873 - ABC-type transport system involved in resistance to organic solvents, permease component, at 787,039 to 788,178
GFF3873
GFF3874 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 788,181 to 788,966
GFF3874
GFF3875 - Paraquat-inducible protein B, at 788,963 to 790,000
GFF3875
Position (kb) 788
789 Strain fitness (log2 ratio) -2
-1
0
1
2 at 787.606 kb on + strand, within GFF3873 at 787.606 kb on + strand, within GFF3873 at 787.607 kb on - strand, within GFF3873 at 787.607 kb on - strand, within GFF3873 at 787.607 kb on - strand, within GFF3873 at 787.607 kb on - strand, within GFF3873 at 787.648 kb on + strand, within GFF3873 at 787.648 kb on + strand, within GFF3873 at 787.848 kb on + strand, within GFF3873 at 787.924 kb on + strand, within GFF3873 at 787.924 kb on + strand, within GFF3873 at 787.925 kb on - strand, within GFF3873 at 787.925 kb on - strand, within GFF3873 at 787.945 kb on + strand, within GFF3873 at 787.946 kb on - strand, within GFF3873 at 787.946 kb on - strand, within GFF3873 at 787.946 kb on - strand, within GFF3873 at 787.946 kb on - strand, within GFF3873 at 787.952 kb on - strand, within GFF3873 at 787.952 kb on - strand, within GFF3873 at 788.015 kb on - strand, within GFF3873 at 788.015 kb on - strand, within GFF3873 at 788.015 kb on - strand, within GFF3873 at 788.400 kb on + strand, within GFF3874 at 788.400 kb on + strand, within GFF3874 at 788.400 kb on + strand, within GFF3874 at 789.059 kb on + strand at 789.059 kb on + strand at 789.060 kb on - strand at 789.060 kb on - strand at 789.060 kb on - strand at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875 at 789.089 kb on + strand, within GFF3875 at 789.182 kb on + strand, within GFF3875 at 789.183 kb on - strand, within GFF3875 at 789.183 kb on - strand, within GFF3875 at 789.365 kb on + strand, within GFF3875 at 789.365 kb on + strand, within GFF3875 at 789.365 kb on + strand, within GFF3875 at 789.366 kb on - strand, within GFF3875 at 789.366 kb on - strand, within GFF3875
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 787,606 + GFF3873 0.50 -0.3 787,606 + GFF3873 0.50 -1.7 787,607 - GFF3873 0.50 +1.2 787,607 - GFF3873 0.50 +0.1 787,607 - GFF3873 0.50 +0.0 787,607 - GFF3873 0.50 +0.1 787,648 + GFF3873 0.53 +0.4 787,648 + GFF3873 0.53 +0.4 787,848 + GFF3873 0.71 -0.1 787,924 + GFF3873 0.78 -0.8 787,924 + GFF3873 0.78 +0.3 787,925 - GFF3873 0.78 +1.1 787,925 - GFF3873 0.78 -0.0 787,945 + GFF3873 0.79 -0.1 787,946 - GFF3873 0.80 -1.1 787,946 - GFF3873 0.80 -0.8 787,946 - GFF3873 0.80 -0.5 787,946 - GFF3873 0.80 +0.4 787,952 - GFF3873 0.80 -0.7 787,952 - GFF3873 0.80 +2.4 788,015 - GFF3873 0.86 -0.0 788,015 - GFF3873 0.86 -1.0 788,015 - GFF3873 0.86 +0.0 788,400 + GFF3874 0.28 +0.5 788,400 + GFF3874 0.28 -0.6 788,400 + GFF3874 0.28 -1.0 789,059 + +0.6 789,059 + -0.0 789,060 - -0.5 789,060 - +0.6 789,060 - -0.1 789,089 + GFF3875 0.12 -1.8 789,089 + GFF3875 0.12 +0.3 789,089 + GFF3875 0.12 -1.8 789,089 + GFF3875 0.12 -0.2 789,182 + GFF3875 0.21 -0.2 789,183 - GFF3875 0.21 -1.1 789,183 - GFF3875 0.21 -0.0 789,365 + GFF3875 0.39 -0.7 789,365 + GFF3875 0.39 +0.2 789,365 + GFF3875 0.39 -0.9 789,366 - GFF3875 0.39 +0.5 789,366 - GFF3875 0.39 +0.1
Or see this region's nucleotide sequence