Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3793 and GFF3794 are separated by 6 nucleotides GFF3794 and GFF3795 are separated by 143 nucleotides
GFF3793 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 692,963 to 694,258
GFF3793
GFF3794 - Tricarboxylate transport protein TctC, at 694,265 to 695,257
GFF3794
GFF3795 - Auxin Efflux Carrier, at 695,401 to 696,372
GFF3795
Position (kb) 694
695
696 Strain fitness (log2 ratio) -2
-1
0
1 at 693.347 kb on + strand, within GFF3793 at 693.348 kb on - strand, within GFF3793 at 693.348 kb on - strand, within GFF3793 at 693.431 kb on + strand, within GFF3793 at 693.431 kb on + strand, within GFF3793 at 693.431 kb on + strand, within GFF3793 at 693.432 kb on - strand, within GFF3793 at 693.432 kb on - strand, within GFF3793 at 693.509 kb on + strand, within GFF3793 at 693.510 kb on - strand, within GFF3793 at 693.530 kb on + strand, within GFF3793 at 693.530 kb on + strand, within GFF3793 at 693.530 kb on + strand, within GFF3793 at 693.531 kb on - strand, within GFF3793 at 693.531 kb on - strand, within GFF3793 at 693.531 kb on - strand, within GFF3793 at 693.531 kb on - strand, within GFF3793 at 693.653 kb on + strand, within GFF3793 at 693.654 kb on - strand, within GFF3793 at 693.654 kb on - strand, within GFF3793 at 693.764 kb on + strand, within GFF3793 at 693.765 kb on - strand, within GFF3793 at 693.926 kb on + strand, within GFF3793 at 693.926 kb on + strand, within GFF3793 at 693.927 kb on - strand, within GFF3793 at 693.927 kb on - strand, within GFF3793 at 694.112 kb on + strand, within GFF3793 at 694.112 kb on + strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.113 kb on - strand, within GFF3793 at 694.157 kb on + strand at 694.256 kb on + strand at 694.257 kb on - strand at 694.257 kb on - strand at 694.652 kb on + strand, within GFF3794 at 694.653 kb on - strand, within GFF3794 at 694.653 kb on - strand, within GFF3794 at 694.835 kb on + strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 694.836 kb on - strand, within GFF3794 at 695.021 kb on + strand, within GFF3794 at 695.021 kb on + strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.022 kb on - strand, within GFF3794 at 695.434 kb on + strand at 695.434 kb on + strand at 695.434 kb on + strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.435 kb on - strand at 695.593 kb on + strand, within GFF3795 at 695.593 kb on + strand, within GFF3795 at 695.594 kb on - strand, within GFF3795 at 695.689 kb on + strand, within GFF3795 at 695.689 kb on + strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.690 kb on - strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.725 kb on + strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795 at 695.726 kb on - strand, within GFF3795
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 693,347 + GFF3793 0.30 -0.0 693,348 - GFF3793 0.30 +0.1 693,348 - GFF3793 0.30 -0.2 693,431 + GFF3793 0.36 +0.2 693,431 + GFF3793 0.36 +0.4 693,431 + GFF3793 0.36 +0.3 693,432 - GFF3793 0.36 +0.5 693,432 - GFF3793 0.36 -0.9 693,509 + GFF3793 0.42 -0.1 693,510 - GFF3793 0.42 -0.5 693,530 + GFF3793 0.44 +0.2 693,530 + GFF3793 0.44 +0.1 693,530 + GFF3793 0.44 +0.1 693,531 - GFF3793 0.44 +0.7 693,531 - GFF3793 0.44 -0.2 693,531 - GFF3793 0.44 +0.7 693,531 - GFF3793 0.44 -0.0 693,653 + GFF3793 0.53 +0.3 693,654 - GFF3793 0.53 +1.4 693,654 - GFF3793 0.53 -0.8 693,764 + GFF3793 0.62 -0.1 693,765 - GFF3793 0.62 -0.1 693,926 + GFF3793 0.74 -0.1 693,926 + GFF3793 0.74 +0.5 693,927 - GFF3793 0.74 -0.1 693,927 - GFF3793 0.74 -0.1 694,112 + GFF3793 0.89 +1.0 694,112 + GFF3793 0.89 -0.3 694,113 - GFF3793 0.89 -0.4 694,113 - GFF3793 0.89 -0.4 694,113 - GFF3793 0.89 -0.7 694,113 - GFF3793 0.89 +0.9 694,113 - GFF3793 0.89 +0.2 694,157 + +0.2 694,256 + +1.2 694,257 - +0.3 694,257 - -1.2 694,652 + GFF3794 0.39 +0.1 694,653 - GFF3794 0.39 +0.3 694,653 - GFF3794 0.39 +0.6 694,835 + GFF3794 0.57 +0.3 694,836 - GFF3794 0.58 -0.3 694,836 - GFF3794 0.58 -1.9 694,836 - GFF3794 0.58 +0.4 695,021 + GFF3794 0.76 +0.2 695,021 + GFF3794 0.76 -0.8 695,022 - GFF3794 0.76 +0.1 695,022 - GFF3794 0.76 +1.0 695,022 - GFF3794 0.76 +0.2 695,022 - GFF3794 0.76 -0.8 695,434 + +0.4 695,434 + -0.5 695,434 + -0.5 695,435 - +0.2 695,435 - -0.4 695,435 - -0.5 695,435 - -0.5 695,593 + GFF3795 0.20 +0.8 695,593 + GFF3795 0.20 -0.4 695,594 - GFF3795 0.20 -0.2 695,689 + GFF3795 0.30 -1.2 695,689 + GFF3795 0.30 -0.5 695,690 - GFF3795 0.30 +0.3 695,690 - GFF3795 0.30 +0.2 695,690 - GFF3795 0.30 -0.2 695,725 + GFF3795 0.33 -0.0 695,725 + GFF3795 0.33 -1.4 695,725 + GFF3795 0.33 -1.1 695,725 + GFF3795 0.33 -0.0 695,725 + GFF3795 0.33 +0.2 695,725 + GFF3795 0.33 +0.5 695,725 + GFF3795 0.33 +0.0 695,726 - GFF3795 0.33 +0.7 695,726 - GFF3795 0.33 -0.3 695,726 - GFF3795 0.33 +0.1 695,726 - GFF3795 0.33 -0.3
Or see this region's nucleotide sequence