Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3771 and GFF3772 are separated by 145 nucleotides GFF3772 and GFF3773 are separated by 111 nucleotides GFF3773 and GFF3774 are separated by 14 nucleotides
GFF3771 - Heat shock protein GrpE, at 668,361 to 668,921
GFF3771
GFF3772 - FIG00349048: hypothetical protein, at 669,067 to 669,396
GFF3772
GFF3773 - Transcriptional regulator, MarR family, at 669,508 to 670,074
GFF3773
GFF3774 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 670,089 to 671,780
GFF3774
Position (kb) 669
670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 669.068 kb on + strand at 669.068 kb on + strand at 669.068 kb on + strand at 669.068 kb on + strand at 669.069 kb on + strand at 669.069 kb on - strand at 669.069 kb on - strand at 669.069 kb on - strand at 669.069 kb on - strand at 669.436 kb on - strand at 669.437 kb on + strand at 669.437 kb on + strand at 669.437 kb on + strand at 669.437 kb on + strand at 669.438 kb on - strand at 669.460 kb on + strand at 669.460 kb on + strand at 669.502 kb on - strand at 669.542 kb on + strand at 669.543 kb on - strand at 669.644 kb on + strand, within GFF3773 at 669.645 kb on - strand, within GFF3773 at 669.920 kb on + strand, within GFF3773 at 669.921 kb on - strand, within GFF3773 at 669.941 kb on + strand, within GFF3773 at 669.942 kb on - strand, within GFF3773 at 670.090 kb on + strand at 670.090 kb on + strand at 670.090 kb on + strand at 670.090 kb on + strand at 670.091 kb on - strand at 670.091 kb on - strand at 670.477 kb on + strand, within GFF3774 at 670.478 kb on - strand, within GFF3774 at 670.478 kb on - strand, within GFF3774 at 670.534 kb on + strand, within GFF3774 at 670.535 kb on - strand, within GFF3774
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 669,068 + +0.2 669,068 + -0.3 669,068 + +0.0 669,068 + -0.4 669,069 + +0.2 669,069 - +0.9 669,069 - -0.1 669,069 - +0.8 669,069 - -0.8 669,436 - -0.1 669,437 + -0.9 669,437 + -0.7 669,437 + +0.2 669,437 + -1.3 669,438 - +0.4 669,460 + -0.0 669,460 + -0.3 669,502 - +0.8 669,542 + -0.3 669,543 - -1.0 669,644 + GFF3773 0.24 -1.4 669,645 - GFF3773 0.24 -3.2 669,920 + GFF3773 0.73 -0.9 669,921 - GFF3773 0.73 -1.5 669,941 + GFF3773 0.76 -2.5 669,942 - GFF3773 0.77 -1.1 670,090 + +0.8 670,090 + +0.3 670,090 + +1.0 670,090 + +0.5 670,091 - -0.4 670,091 - +0.6 670,477 + GFF3774 0.23 -0.1 670,478 - GFF3774 0.23 -0.5 670,478 - GFF3774 0.23 -0.9 670,534 + GFF3774 0.26 +0.9 670,535 - GFF3774 0.26 +0.1
Or see this region's nucleotide sequence