Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3761 and GFF3762 are separated by 2 nucleotides GFF3762 and GFF3763 are separated by 72 nucleotides GFF3763 and GFF3764 are separated by 28 nucleotides
GFF3761 - Transcriptional regulator, DeoR family, at 654,862 to 655,836
GFF3761
GFF3762 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 655,839 to 657,065
GFF3762
GFF3763 - hypothetical protein, at 657,138 to 657,812
GFF3763
GFF3764 - inversin protein alternative isoform, putative, at 657,841 to 662,424
GFF3764
Position (kb) 655
656
657
658 Strain fitness (log2 ratio) -2
-1
0
1 at 655.042 kb on + strand, within GFF3761 at 655.411 kb on + strand, within GFF3761 at 655.411 kb on + strand, within GFF3761 at 655.537 kb on + strand, within GFF3761 at 655.537 kb on + strand, within GFF3761 at 655.537 kb on + strand, within GFF3761 at 655.537 kb on + strand, within GFF3761 at 655.538 kb on - strand, within GFF3761 at 655.538 kb on - strand, within GFF3761 at 655.538 kb on - strand, within GFF3761 at 655.721 kb on - strand, within GFF3761 at 655.721 kb on - strand, within GFF3761 at 656.126 kb on - strand, within GFF3762 at 656.126 kb on - strand, within GFF3762 at 656.126 kb on - strand, within GFF3762 at 656.126 kb on - strand, within GFF3762 at 656.131 kb on + strand, within GFF3762 at 656.131 kb on + strand, within GFF3762 at 656.560 kb on + strand, within GFF3762 at 656.561 kb on - strand, within GFF3762 at 656.579 kb on - strand, within GFF3762 at 656.797 kb on + strand, within GFF3762 at 656.879 kb on - strand, within GFF3762 at 657.277 kb on + strand, within GFF3763 at 657.278 kb on - strand, within GFF3763 at 657.421 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.496 kb on + strand, within GFF3763 at 657.497 kb on - strand, within GFF3763 at 657.497 kb on - strand, within GFF3763 at 657.580 kb on + strand, within GFF3763 at 657.608 kb on - strand, within GFF3763 at 657.608 kb on - strand, within GFF3763 at 657.671 kb on - strand, within GFF3763 at 657.674 kb on - strand, within GFF3763 at 657.674 kb on - strand, within GFF3763 at 657.674 kb on - strand, within GFF3763
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 655,042 + GFF3761 0.18 +0.8 655,411 + GFF3761 0.56 +1.1 655,411 + GFF3761 0.56 +0.0 655,537 + GFF3761 0.69 +0.4 655,537 + GFF3761 0.69 +0.0 655,537 + GFF3761 0.69 +0.4 655,537 + GFF3761 0.69 +0.8 655,538 - GFF3761 0.69 +0.3 655,538 - GFF3761 0.69 +0.2 655,538 - GFF3761 0.69 +0.6 655,721 - GFF3761 0.88 -0.1 655,721 - GFF3761 0.88 -0.6 656,126 - GFF3762 0.23 -1.1 656,126 - GFF3762 0.23 +0.2 656,126 - GFF3762 0.23 +0.5 656,126 - GFF3762 0.23 +0.1 656,131 + GFF3762 0.24 -0.4 656,131 + GFF3762 0.24 +0.5 656,560 + GFF3762 0.59 -0.6 656,561 - GFF3762 0.59 -0.5 656,579 - GFF3762 0.60 -0.1 656,797 + GFF3762 0.78 -0.4 656,879 - GFF3762 0.85 +0.0 657,277 + GFF3763 0.21 +0.4 657,278 - GFF3763 0.21 -0.9 657,421 + GFF3763 0.42 -1.5 657,496 + GFF3763 0.53 +0.4 657,496 + GFF3763 0.53 +0.1 657,496 + GFF3763 0.53 -0.0 657,496 + GFF3763 0.53 +0.2 657,496 + GFF3763 0.53 +0.6 657,496 + GFF3763 0.53 -0.3 657,496 + GFF3763 0.53 +0.8 657,497 - GFF3763 0.53 -2.4 657,497 - GFF3763 0.53 +0.8 657,580 + GFF3763 0.65 +0.2 657,608 - GFF3763 0.70 +0.4 657,608 - GFF3763 0.70 +0.2 657,671 - GFF3763 0.79 +0.2 657,674 - GFF3763 0.79 -0.4 657,674 - GFF3763 0.79 -1.1 657,674 - GFF3763 0.79 +0.7
Or see this region's nucleotide sequence