Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3718 and GFF3719 are separated by 2 nucleotides GFF3719 and GFF3720 are separated by 73 nucleotides GFF3720 and GFF3721 overlap by 4 nucleotides
GFF3718 - Transcriptional regulator, AraC family, at 611,567 to 612,556
GFF3718
GFF3719 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 612,559 to 613,326
GFF3719
GFF3720 - Metal-dependent hydrolase, at 613,400 to 614,215
GFF3720
GFF3721 - Fumarylacetoacetate hydrolase family protein, at 614,212 to 615,198
GFF3721
Position (kb) 612
613
614 Strain fitness (log2 ratio) -2
-1
0
1 at 612.339 kb on - strand, within GFF3718 at 612.488 kb on + strand at 612.489 kb on - strand at 612.656 kb on + strand, within GFF3719 at 612.656 kb on + strand, within GFF3719 at 612.656 kb on + strand, within GFF3719 at 612.656 kb on + strand, within GFF3719 at 612.774 kb on - strand, within GFF3719 at 612.902 kb on + strand, within GFF3719 at 613.100 kb on + strand, within GFF3719 at 613.100 kb on + strand, within GFF3719 at 613.167 kb on - strand, within GFF3719 at 613.370 kb on + strand at 613.502 kb on + strand, within GFF3720 at 613.503 kb on - strand, within GFF3720 at 613.719 kb on - strand, within GFF3720 at 613.895 kb on + strand, within GFF3720
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 612,339 - GFF3718 0.78 -0.0 612,488 + +0.6 612,489 - -0.6 612,656 + GFF3719 0.13 -1.3 612,656 + GFF3719 0.13 -1.8 612,656 + GFF3719 0.13 -0.8 612,656 + GFF3719 0.13 +0.3 612,774 - GFF3719 0.28 -0.3 612,902 + GFF3719 0.45 -1.2 613,100 + GFF3719 0.70 -2.1 613,100 + GFF3719 0.70 -0.3 613,167 - GFF3719 0.79 -1.0 613,370 + +0.1 613,502 + GFF3720 0.12 +0.2 613,503 - GFF3720 0.13 +0.3 613,719 - GFF3720 0.39 +0.7 613,895 + GFF3720 0.61 -1.5
Or see this region's nucleotide sequence