Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3666

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
552,625	+				-0.4
552,625	+				+0.1
552,625	+				-1.3
552,626	-				+0.7
552,664	+				+0.0
552,665	-				+0.5
552,760	-				+0.0
552,848	+				+2.5
552,848	+				+0.5
552,848	+				-0.2
552,848	+				-0.8
552,849	-				-0.2
552,849	-				-0.5
552,849	-				+0.3
552,849	-				+0.9
553,004	+				-0.3
553,005	-				+0.4
553,117	-				-0.4
553,411	+		GFF3666	0.23	+0.0
553,412	-		GFF3666	0.23	-0.9
553,744	+		GFF3666	0.49	-0.6
553,745	-		GFF3666	0.49	-1.1
554,356	+				-0.1
554,356	+				+1.3
554,813	+		GFF3667	0.22	+0.7
554,930	+		GFF3667	0.28	-0.1
554,931	-		GFF3667	0.28	+0.5
555,266	+		GFF3667	0.47	+0.5
555,266	+		GFF3667	0.47	+0.8
555,267	-		GFF3667	0.47	+0.5
555,299	+		GFF3667	0.49	+0.7