Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3608 and GFF3609 are separated by 103 nucleotides GFF3609 and GFF3610 are separated by 91 nucleotides GFF3610 and GFF3611 are separated by 14 nucleotides
GFF3608 - hypothetical protein, at 494,947 to 496,116
GFF3608
GFF3609 - Transcriptional regulator, LysR family, at 496,220 to 497,152
GFF3609
GFF3610 - 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase, at 497,244 to 497,798
GFF3610
GFF3611 - putative exported protein, at 497,813 to 498,793
GFF3611
Position (kb) 496
497
498 Strain fitness (log2 ratio) -1
0
1 at 495.545 kb on + strand, within GFF3608 at 495.545 kb on + strand, within GFF3608 at 495.545 kb on + strand, within GFF3608 at 495.546 kb on - strand, within GFF3608 at 495.546 kb on - strand, within GFF3608 at 495.546 kb on - strand, within GFF3608 at 495.546 kb on - strand, within GFF3608 at 495.554 kb on + strand, within GFF3608 at 495.554 kb on + strand, within GFF3608 at 495.554 kb on + strand, within GFF3608 at 495.554 kb on + strand, within GFF3608 at 495.554 kb on - strand, within GFF3608 at 495.555 kb on - strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.896 kb on + strand, within GFF3608 at 495.897 kb on - strand, within GFF3608 at 495.897 kb on - strand, within GFF3608 at 495.897 kb on - strand, within GFF3608 at 495.981 kb on + strand, within GFF3608 at 496.108 kb on + strand at 496.109 kb on - strand at 496.109 kb on - strand at 496.109 kb on - strand at 496.109 kb on - strand at 496.129 kb on + strand at 496.129 kb on + strand at 496.130 kb on - strand at 496.130 kb on - strand at 496.156 kb on + strand at 496.156 kb on + strand at 496.156 kb on + strand at 496.157 kb on - strand at 496.221 kb on + strand at 496.222 kb on - strand at 496.519 kb on - strand, within GFF3609 at 496.519 kb on - strand, within GFF3609 at 496.519 kb on - strand, within GFF3609 at 496.519 kb on - strand, within GFF3609 at 496.533 kb on + strand, within GFF3609 at 497.118 kb on + strand at 497.180 kb on + strand at 497.240 kb on + strand at 497.240 kb on + strand at 497.240 kb on + strand at 497.241 kb on - strand at 497.455 kb on - strand, within GFF3610 at 497.596 kb on - strand, within GFF3610 at 497.596 kb on - strand, within GFF3610 at 498.080 kb on + strand, within GFF3611 at 498.080 kb on + strand, within GFF3611 at 498.146 kb on + strand, within GFF3611
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 495,545 + GFF3608 0.51 +0.7 495,545 + GFF3608 0.51 +0.3 495,545 + GFF3608 0.51 -0.7 495,546 - GFF3608 0.51 +0.3 495,546 - GFF3608 0.51 -0.3 495,546 - GFF3608 0.51 -0.1 495,546 - GFF3608 0.51 +0.4 495,554 + GFF3608 0.52 +0.1 495,554 + GFF3608 0.52 -0.3 495,554 + GFF3608 0.52 +0.1 495,554 + GFF3608 0.52 +1.2 495,554 - GFF3608 0.52 -0.1 495,555 - GFF3608 0.52 +0.5 495,896 + GFF3608 0.81 +0.6 495,896 + GFF3608 0.81 +0.1 495,896 + GFF3608 0.81 -0.1 495,896 + GFF3608 0.81 -0.5 495,896 + GFF3608 0.81 -0.2 495,897 - GFF3608 0.81 +0.5 495,897 - GFF3608 0.81 +0.6 495,897 - GFF3608 0.81 -0.5 495,981 + GFF3608 0.88 -0.6 496,108 + -1.0 496,109 - +0.1 496,109 - +0.1 496,109 - -0.2 496,109 - -0.7 496,129 + +0.5 496,129 + -0.1 496,130 - +0.2 496,130 - -0.5 496,156 + -0.5 496,156 + -1.2 496,156 + -1.3 496,157 - -1.1 496,221 + -0.3 496,222 - +1.5 496,519 - GFF3609 0.32 -0.7 496,519 - GFF3609 0.32 +0.3 496,519 - GFF3609 0.32 -0.8 496,519 - GFF3609 0.32 -0.1 496,533 + GFF3609 0.34 -1.0 497,118 + +0.1 497,180 + +0.7 497,240 + -0.3 497,240 + +0.0 497,240 + -0.5 497,241 - +0.9 497,455 - GFF3610 0.38 +0.0 497,596 - GFF3610 0.63 +0.2 497,596 - GFF3610 0.63 -0.0 498,080 + GFF3611 0.27 -0.3 498,080 + GFF3611 0.27 -1.1 498,146 + GFF3611 0.34 -1.7
Or see this region's nucleotide sequence