Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3546 and GFF3547 overlap by 33 nucleotides GFF3547 and GFF3548 are separated by 96 nucleotides GFF3548 and GFF3549 are separated by 9 nucleotides
GFF3546 - Ferrichrome-iron receptor, at 436,606 to 438,816
GFF3546
GFF3547 - hypothetical protein, at 438,784 to 438,900
GFF3547
GFF3548 - hypothetical protein, at 438,997 to 439,230
GFF3548
GFF3549 - Alcohol dehydrogenase (EC 1.1.1.1), at 439,240 to 440,238
GFF3549
Position (kb) 438
439 Strain fitness (log2 ratio) -2
-1
0
1 at 437.822 kb on + strand, within GFF3546 at 437.822 kb on + strand, within GFF3546 at 437.927 kb on + strand, within GFF3546 at 437.972 kb on + strand, within GFF3546 at 437.973 kb on - strand, within GFF3546 at 438.026 kb on + strand, within GFF3546 at 438.032 kb on + strand, within GFF3546 at 438.033 kb on - strand, within GFF3546 at 438.033 kb on - strand, within GFF3546 at 438.034 kb on - strand, within GFF3546 at 438.123 kb on + strand, within GFF3546 at 438.255 kb on - strand, within GFF3546 at 438.830 kb on + strand, within GFF3547 at 438.831 kb on - strand, within GFF3547 at 438.831 kb on - strand, within GFF3547 at 438.831 kb on - strand, within GFF3547 at 438.831 kb on - strand, within GFF3547 at 438.899 kb on - strand at 438.910 kb on - strand at 438.910 kb on - strand at 438.910 kb on - strand at 438.990 kb on + strand at 438.991 kb on - strand at 439.229 kb on - strand at 439.351 kb on + strand, within GFF3549 at 439.352 kb on - strand, within GFF3549 at 439.352 kb on - strand, within GFF3549 at 439.366 kb on + strand, within GFF3549 at 439.631 kb on - strand, within GFF3549 at 439.631 kb on - strand, within GFF3549 at 439.631 kb on - strand, within GFF3549 at 439.814 kb on - strand, within GFF3549 at 439.814 kb on - strand, within GFF3549 at 439.814 kb on - strand, within GFF3549
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 437,822 + GFF3546 0.55 +0.6 437,822 + GFF3546 0.55 +0.6 437,927 + GFF3546 0.60 -1.9 437,972 + GFF3546 0.62 +0.3 437,973 - GFF3546 0.62 +0.4 438,026 + GFF3546 0.64 -0.5 438,032 + GFF3546 0.64 -0.1 438,033 - GFF3546 0.65 +0.2 438,033 - GFF3546 0.65 -0.3 438,034 - GFF3546 0.65 +0.2 438,123 + GFF3546 0.69 +0.8 438,255 - GFF3546 0.75 -0.2 438,830 + GFF3547 0.39 +0.4 438,831 - GFF3547 0.40 -0.4 438,831 - GFF3547 0.40 +0.3 438,831 - GFF3547 0.40 -0.6 438,831 - GFF3547 0.40 -1.3 438,899 - -0.2 438,910 - -0.4 438,910 - -0.1 438,910 - -0.0 438,990 + +0.4 438,991 - -0.1 439,229 - +0.3 439,351 + GFF3549 0.11 -0.1 439,352 - GFF3549 0.11 -0.3 439,352 - GFF3549 0.11 -0.4 439,366 + GFF3549 0.13 -0.0 439,631 - GFF3549 0.39 -0.2 439,631 - GFF3549 0.39 +0.1 439,631 - GFF3549 0.39 -0.7 439,814 - GFF3549 0.57 +0.1 439,814 - GFF3549 0.57 -0.5 439,814 - GFF3549 0.57 +0.5
Or see this region's nucleotide sequence