Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3536 and GFF3537 are separated by 103 nucleotides GFF3537 and GFF3538 are separated by 23 nucleotides GFF3538 and GFF3539 are separated by 11 nucleotides
GFF3536 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 426,697 to 428,283
GFF3536
GFF3537 - CopG protein, at 428,387 to 429,115
GFF3537
GFF3538 - Copper tolerance protein, at 429,139 to 429,654
GFF3538
GFF3539 - Multicopper oxidase, at 429,666 to 431,078
GFF3539
Position (kb) 428
429
430 Strain fitness (log2 ratio) -1
0
1 at 427.896 kb on - strand, within GFF3536 at 427.896 kb on - strand, within GFF3536 at 427.952 kb on + strand, within GFF3536 at 427.953 kb on - strand, within GFF3536 at 427.953 kb on - strand, within GFF3536 at 428.007 kb on - strand, within GFF3536 at 428.007 kb on - strand, within GFF3536 at 428.190 kb on - strand at 428.190 kb on - strand at 428.343 kb on + strand at 428.343 kb on + strand at 428.343 kb on + strand at 428.344 kb on - strand at 428.344 kb on - strand at 428.344 kb on - strand at 428.344 kb on - strand at 428.362 kb on + strand at 428.363 kb on - strand at 428.419 kb on - strand at 428.718 kb on + strand, within GFF3537 at 428.719 kb on - strand, within GFF3537 at 428.719 kb on - strand, within GFF3537 at 428.739 kb on + strand, within GFF3537 at 428.739 kb on + strand, within GFF3537 at 428.740 kb on - strand, within GFF3537 at 428.895 kb on + strand, within GFF3537 at 429.281 kb on + strand, within GFF3538 at 429.281 kb on + strand, within GFF3538 at 429.281 kb on + strand, within GFF3538 at 429.812 kb on - strand, within GFF3539 at 429.830 kb on - strand, within GFF3539 at 429.993 kb on - strand, within GFF3539 at 429.994 kb on + strand, within GFF3539 at 429.995 kb on - strand, within GFF3539
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 427,896 - GFF3536 0.76 -0.2 427,896 - GFF3536 0.76 +0.1 427,952 + GFF3536 0.79 -0.1 427,953 - GFF3536 0.79 +0.5 427,953 - GFF3536 0.79 -0.7 428,007 - GFF3536 0.83 +0.5 428,007 - GFF3536 0.83 +0.7 428,190 - -0.6 428,190 - +0.1 428,343 + +0.2 428,343 + +0.6 428,343 + -1.2 428,344 - +0.2 428,344 - -0.4 428,344 - +1.0 428,344 - +0.0 428,362 + -0.0 428,363 - -0.3 428,419 - -0.6 428,718 + GFF3537 0.45 -0.5 428,719 - GFF3537 0.46 -0.1 428,719 - GFF3537 0.46 -0.7 428,739 + GFF3537 0.48 -0.6 428,739 + GFF3537 0.48 +0.4 428,740 - GFF3537 0.48 -0.1 428,895 + GFF3537 0.70 +0.5 429,281 + GFF3538 0.28 -1.6 429,281 + GFF3538 0.28 -0.2 429,281 + GFF3538 0.28 +1.2 429,812 - GFF3539 0.10 +0.5 429,830 - GFF3539 0.12 +0.1 429,993 - GFF3539 0.23 -0.2 429,994 + GFF3539 0.23 +0.1 429,995 - GFF3539 0.23 -1.0
Or see this region's nucleotide sequence